ggKbase home page

PLM3-1_170_b2_sep16_scaffold_2012

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_2012_1
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

2..652
DNA (651bp) protein (217aa)
Dihydroorotate dehydrogenase bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
pyrD; dihydroorotate dehydrogenase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_2012_2
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

657..1919
DNA (1263bp) protein (421aa)
Folylpolyglutamate synthase Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AK17_IGNAJ
folC; Folylpolyglutamate synthase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_2012_3
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

2109..3362
DNA (1254bp) protein (418aa)
Transcription termination factor Rho bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
rho; transcription termination factor Rho
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_2012_4
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

3471..4742
DNA (1272bp) protein (424aa)
hypothetical protein bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_2012_5
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

4742..5725
DNA (984bp) protein (328aa)
4-hydroxythreonine-4-phosphate dehydrogenase bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_2012_6
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

5712..6455
DNA (744bp) protein (248aa)
SAM-dependent methyltransferase bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
SAM-dependent methyltransferase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_2012_7
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

6442..7116
DNA (675bp) protein (225aa)
Cell division transport system ATP-binding protein Tax=Melioribacter roseus (strain P3M) RepID=I6YRT0_MELRP
Cell division transport system ATP-binding protein
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_2012_8
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(7117..7758)
DNA (642bp) protein (214aa)
Adenylate kinase Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AK11_IGNAJ
adk; adenylate kinase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_2012_9
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(7904..8395)
DNA (492bp) protein (164aa)
Cytosine deaminase Tax=Melioribacter roseus (strain P3M) RepID=I6Z274_MELRP
cytosine deaminase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_2012_10
unknown

Not on your lists

comp(8395..8508)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2012_trna_1
unknown

Not on your lists

8705..8778
DNA (74bp)
transferRNA Arg
PLM3-1_170_b2_sep16_scaffold_2012_11
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

8809..9294
DNA (486bp) protein (162aa)
Putative uncharacterized protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IG64_ANADE bin=16ft_combo_ws3_JS1 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phospholipid methyltransferase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_2012_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9506..9976
DNA (471bp) protein (157aa)
Uncharacterized protein {ECO:0000313|EMBL:CDQ09416.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
PLM3-1_170_b2_sep16_scaffold_2012_13
GWC2_Deltaproteobacteria_42_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9951..10580
DNA (630bp) protein (210aa)
Tol-pal system protein YbgF Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SRB0_9DELT
hypothetical protein
Tax=GWC2_Deltaproteobacteria_42_11_curated
Displaying 14 items

View Taxonomy