ggKbase home page

PLM3-1_170_b2_sep16_scaffold_1404

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1404_1
Ignavibacterium album, Ignavibacterium, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

1..2061
DNA (2061bp) protein (687aa)
ial:IALB_2605 hypothetical protein bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFH50308.1}; species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae; Ignavibacterium.;" source="Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 /; Mat9-16).;"
PLM3-1_170_b2_sep16_scaffold_1404_2
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(2132..2761)
DNA (630bp) protein (210aa)
hypothetical protein bin=GWA2_Ignavibacteria_55_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_3
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

3240..3770
DNA (531bp) protein (177aa)
hypothetical protein bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_4
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

3796..4491
DNA (696bp) protein (232aa)
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_5
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

4560..5873
DNA (1314bp) protein (438aa)
hypothetical protein Tax=Fischerella muscicola RepID=UPI0002FCD50F
Superfamily II DNA/RNA helicase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_6
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

5873..6427
DNA (555bp) protein (185aa)
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_7
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(6526..7506)
DNA (981bp) protein (327aa)
Uncharacterized conserved membrane protein bin=GWF2_Ignavibacteria_35_20 species=Methylacidiphilum infernorum genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_8
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(7536..9083)
DNA (1548bp) protein (516aa)
Type I phosphodiesterase/nucleotide pyrophosphatase bin=GWF2_Ignavibacteria_35_20 species=Stanieria cyanosphaera genus=Stanieria taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
type I phosphodiesterase/nucleotide pyrophosphatase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_9
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(9070..10056)
DNA (987bp) protein (329aa)
Putative dehydrogenase bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
dehydrogenase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_10
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(10053..10976)
DNA (924bp) protein (308aa)
putative glycosyltransferase (EC:2.4.-.-)
Glycosyl transferase family 2 bin=GWF2_Ignavibacteria_35_20 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_11
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(10973..11890)
DNA (918bp) protein (306aa)
Glycosyl transferase family 2 bin=GWF2_Ignavibacteria_35_20 species=Methanothermus fervidus genus=Methanothermus taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
family 2 glycosyl transferase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_12
unknown

Not on your lists

comp(12056..12238)
DNA (183bp) protein (61aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1404_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(12219..13007)
DNA (789bp) protein (263aa)
aldo/keto reductase bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin1_lowGC organism_group=Unknown_CP
aldo/keto reductase
Tax=CSP1_2_Dadabacteria
PLM3-1_170_b2_sep16_scaffold_1404_14
Geminocystis sp. NIES-3709, Geminocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(13024..14598)
DNA (1575bp) protein (525aa)
Type I phosphodiesterase/nucleotide pyrophosphatase Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KCX3_CYAP7
Uncharacterized protein {ECO:0000313|EMBL:BAQ66474.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Geminocystis.;" source="Geminocystis sp. NIES-3709.;"
type I phosphodiesterase/nucleotide pyrophosphatase
PLM3-1_170_b2_sep16_scaffold_1404_15
Geminocystis sp. NIES-3709, Geminocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(15028..16599)
DNA (1572bp) protein (524aa)
Type I phosphodiesterase/nucleotide pyrophosphatase Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KCX3_CYAP7
Uncharacterized protein {ECO:0000313|EMBL:BAQ66474.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Geminocystis.;" source="Geminocystis sp. NIES-3709.;"
type I phosphodiesterase/nucleotide pyrophosphatase
PLM3-1_170_b2_sep16_scaffold_1404_16
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(16617..17534)
DNA (918bp) protein (306aa)
Glycosyl transferase family 2 bin=GWF2_Ignavibacteria_35_20 species=Methanothermus fervidus genus=Methanothermus taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
family 2 glycosyl transferase
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_1404_17
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(17579..18382)
DNA (804bp) protein (268aa)
Uncharacterized conserved membrane protein bin=GWF2_Ignavibacteria_35_20 species=Methylacidiphilum infernorum genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM3-1_170_b2_sep16_scaffold_1404_18
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(18466..19458)
DNA (993bp) protein (331aa)
Putative uncharacterized protein bin=GWF2_Ignavibacteria_35_20 species=unknown genus=Halothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
aldo/keto reductase
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_1404_19
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(19570..19857)
DNA (288bp) protein (96aa)
Aldo/keto reductase bin=GWF2_Ignavibacteria_35_20 species=unknown genus=Halothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_1404_20
unknown

Not on your lists

comp(19854..20759)
DNA (906bp) protein (302aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1404_21
unknown

Not on your lists

comp(20756..21415)
DNA (660bp) protein (220aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1404_22
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(21422..22414)
DNA (993bp) protein (331aa)
Putative uncharacterized protein bin=GWF2_Ignavibacteria_35_20 species=unknown genus=Halothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
aldo/keto reductase
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_1404_23
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(22419..24005)
DNA (1587bp) protein (529aa)
Putative uncharacterized protein bin=GWF2_Ignavibacteria_35_20 species=Thaumarchaeota archaeon SCGC AB-539-E09 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
type I phosphodiesterase/nucleotide pyrophosphatase
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM3-1_170_b2_sep16_scaffold_1404_24
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(24007..25083)
DNA (1077bp) protein (359aa)
Putative Glycosyl transferase, group 1 bin=GWF2_Ignavibacteria_35_20 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
putative glycosyl transferase, group 1
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM3-1_170_b2_sep16_scaffold_1404_25
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25269..26498)
DNA (1230bp) protein (410aa)
Uncharacterized protein Tax=Clostridium kluyveri RepID=B9E5U0_CLOK1
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:AKA71906.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
PLM3-1_170_b2_sep16_scaffold_1404_26
Geminocystis sp. NIES-3709, Geminocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(26528..28099)
DNA (1572bp) protein (524aa)
Type I phosphodiesterase / nucleotide pyrophosphatase superfamily Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VM39_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:BAQ66474.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Geminocystis.;" source="Geminocystis sp. NIES-3709.;"
type I phosphodiesterase/nucleotide pyrophosphatase
PLM3-1_170_b2_sep16_scaffold_1404_27
Halobacteroides halobius, Halobacteroides, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28143..29285)
DNA (1143bp) protein (381aa)
Polysaccharide pyruvyl transferase CsaB Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0KAQ7_HALHC
polysaccharide pyruvyl transferase CsaB
Polysaccharide pyruvyl transferase CsaB {ECO:0000313|EMBL:AGB42101.1}; species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Halobacteroides.;" source="Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1).;"
PLM3-1_170_b2_sep16_scaffold_1404_28
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(29382..30515)
DNA (1134bp) protein (378aa)
Glycosyl transferase, group 1 bin=GWF2_Ignavibacteria_35_20 species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
glycosyl transferase, group 1
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_1404_29
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(30861..31841)
DNA (981bp) protein (327aa)
Putative uncharacterized protein bin=GWF2_Ignavibacteria_35_20 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
putative RNA methylase family protein
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM3-1_170_b2_sep16_scaffold_1404_30
CG_Ignavi_02, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(32102..34105)
DNA (2004bp) protein (668aa)
Putative uncharacterized protein Tax=Candidatus Cloacamonas acidaminovorans str. Evry RepID=B0VJF5_CLOAI bin=RAAC39 species=Candidatus Cloacimonas acidaminovorans genus=Candidatus Cloacimonas taxon_order=unknown taxon_class=unknown phylum=Cloacimonetes tax=RAAC39 organism_group=Ignavibacteria
VCBS repeat-containing protein
Tax=CG_Ignavi_02
Displaying items 1-30 of 31 in total

View Taxonomy