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PLM3-1_170_b2_sep16_scaffold_10527

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_10527_1
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(2..790)
DNA (789bp) protein (263aa)
DNA ligase D Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LYX5_GEODF
DNA ligase D
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_10527_2
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(1014..1568)
DNA (555bp) protein (185aa)
ATP dependent DNA ligase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G740_GEOUR
ATP dependent DNA ligase
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_10527_3
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(1616..2212)
DNA (597bp) protein (199aa)
ATP-dependent DNA ligase Tax=Cytophagales str. B6 RepID=UPI0003B73108
ATP dependent DNA ligase
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_10527_4
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2606..2863
DNA (258bp) protein (86aa)
Uncharacterized protein Tax=Sphingobacterium sp. (strain 21) RepID=F4C7D5_SPHS2
Putative membrane protein {ECO:0000313|EMBL:EYF02824.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_10527_5
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(2925..3176)
DNA (252bp) protein (84aa)
ymgE; transglycosylase bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
ymgE; transglycosylase
Tax=GWB2_Ignavibacteria_35_6b_curated
PLM3-1_170_b2_sep16_scaffold_10527_6
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3640..4149
DNA (510bp) protein (170aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C540A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCC98502.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PLM3-1_170_b2_sep16_scaffold_10527_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4349..4498
DNA (150bp) protein (50aa)
Uncharacterized protein Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EBL4_GEOBB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_10527_8
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(4830..5252)
DNA (423bp) protein (141aa)
hypothetical protein Tax=Echinicola pacifica RepID=UPI0003826133
TrkA domain protein
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_10527_9
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(5275..6432)
DNA (1158bp) protein (386aa)
Membrane protein, TrkA-C domain pair-containing Tax=Bacteria RepID=D7AMD8_GEOSK
membrane protein
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_10527_10
unknown

Not on your lists

comp(6426..6542)
DNA (117bp) protein (39aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_10527_11
unknown

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comp(6829..6978)
DNA (150bp) protein (50aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_10527_12
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

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comp(7043..7405)
DNA (363bp) protein (121aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3) bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
response regulator receiver
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
PLM3-1_170_b2_sep16_scaffold_10527_13
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(7858..7977)
DNA (120bp) protein (40aa)
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_10527_14
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8239..9174)
DNA (936bp) protein (312aa)
HipA domain protein Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ER00_RUNSL
HipA domain-containing protein
HipA domain protein {ECO:0000313|EMBL:AEI52041.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
PLM3-1_170_b2_sep16_scaffold_10527_15
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(9167..9493)
DNA (327bp) protein (109aa)
HipA domain protein Tax=Prevotella stercorea DSM 18206 RepID=G6AVU2_9BACT
phosphatidylinositol kinase
Tax=RBG_16_Ignavibacteria_35_7_curated
PLM3-1_170_b2_sep16_scaffold_10527_16
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(9496..9606)
DNA (111bp) protein (37aa)
Transcriptional regulator, y4mF family bin=GWE1_Spirochaetes_32_154 species=Runella slithyformis genus=Runella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE1_Spirochaetes_32_154 organism_group=Spirochaetes
XRE family transcriptional regulator
Tax=RBG_16_Ignavibacteria_35_7_curated
Displaying 16 items

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