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PLM3-1_170_b2_sep16_scaffold_5625

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_5625_1
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(1..276)
DNA (276bp) protein (92aa)
WD40-like repeat protein bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_5625_2
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(400..1377)
DNA (978bp) protein (326aa)
WD40 domain protein beta propeller bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
WD40 domain-containing protein beta propeller
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_5625_3
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(1331..2908)
DNA (1578bp) protein (526aa)
WD40 domain protein beta propeller bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
WD40 domain-containing protein beta propeller
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_5625_4
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(3119..4153)
DNA (1035bp) protein (345aa)
Hexose-6-phosphate isomerase Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AKC9_IGNAJ
Hexose-6-phosphate isomerase
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_5625_5
unknown

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comp(4220..4309)
DNA (90bp) protein (30aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_5625_6
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(4332..6098)
DNA (1767bp) protein (589aa)
Phosphoenolpyruvate-protein phosphotransferase bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
ptsI; phosphotransferase system enzyme I
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_5625_7
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(6095..6211)
DNA (117bp) protein (39aa)
Phosphotransferase system, phosphocarrier protein HPr Tax=Melioribacter roseus (strain P3M) RepID=I6Z9J0_MELRP
phosphotransferase system, phosphocarrier protein HPr
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:AFN75810.1}; species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
PLM3-1_170_b2_sep16_scaffold_5625_8
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(6211..6360)
DNA (150bp) protein (50aa)
Phosphotransferase system, phosphocarrier protein HPr Tax=Melioribacter roseus (strain P3M) RepID=I6Z9J0_MELRP
phosphotransferase system, phosphocarrier protein HPr
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_5625_9
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(6360..7355)
DNA (996bp) protein (332aa)
Geranylgeranyl pyrophosphate synthase Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AKD2_IGNAJ
geranylgeranyl pyrophosphate synthase
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_5625_10
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(7465..8385)
DNA (921bp) protein (307aa)
Isopentenyl-diphosphate delta-isomerase bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
FMN-dependent L-lactate dehydrogenase-like protein
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_5625_11
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(8448..10331)
DNA (1884bp) protein (628aa)
4-amino-4-deoxychorismate lyase Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AKD4_IGNAJ
pabBC; 4-amino-4-deoxychorismate lyase
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_5625_12
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

10598..11869
DNA (1272bp) protein (424aa)
Major facilitator superfamily permease Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AKD5_IGNAJ
Major facilitator superfamily permease
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b2_sep16_scaffold_5625_13
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(11939..12772)
DNA (834bp) protein (278aa)
ABC-type transporter, integral membrane subunit bin=GWA2_Ignavibacteria_55_11 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
ABC transporter
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3-1_170_b2_sep16_scaffold_5625_14
RIFOXYD2_FULL_Planctomycetes_41_16_curated, Planctomycetes, Bacteria

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comp(12908..13297)
DNA (390bp) protein (130aa)
transposase IS200/IS605 family bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
transposase IS200-family protein
Tax=RIFOXYD2_FULL_Planctomycetes_41_16_curated
PLM3-1_170_b2_sep16_scaffold_5625_15
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(13574..15730)
DNA (2157bp) protein (719aa)
hypothetical protein Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI0003673A4A
malF; maltose/maltodextrin transport permease homologue
Tax=GWC2_Ignavibacteria_rel_36_12_curated
Displaying 15 items

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