ggKbase home page

PLM3-1_170_b2_sep16_scaffold_4807

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_4807_1
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3..425
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGR1_NITGG
sigma-54 interacting regulator
Sigma-54 interacting regulator {ECO:0000313|EMBL:AIF83677.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_4807_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

514..1554
DNA (1041bp) protein (347aa)
fen; flap structure-specific endonuclease (EC:3.1.-.-)
Flap endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_00614}; Short=FEN-1 {ECO:0000256|HAMAP-Rule:MF_00614};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00614};; Flap structure-specific endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_00614}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Flap endonuclease 1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICB3_NITGG
PLM3-1_170_b2_sep16_scaffold_4807_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

1831..2466
DNA (636bp) protein (212aa)
Major intrinsic protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKL4_NITGG
major intrinsic protein
Major intrinsic protein {ECO:0000313|EMBL:AFU59022.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_4807_4
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(2477..3061)
DNA (585bp) protein (195aa)
Putative ferritin Dps family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIV9_NITGG
ferritin-like protein
Ferritin-like protein {ECO:0000313|EMBL:AIF83671.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_4807_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(3108..3503)
DNA (396bp) protein (132aa)
Putative archease protein family (DUF101/UPF0211) Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INA3_NITGG
hypothetical protein
Putative archease protein family (DUF101/UPF0211) {ECO:0000313|EMBL:AFU59024.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_4807_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


3643..4899
DNA (1257bp) protein (419aa)
hisS; histidine--tRNA ligase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Histidine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGR5_NITGG
PLM3-1_170_b2_sep16_scaffold_4807_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(4889..5161)
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICB9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59026.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_4807_8
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

5674..6057
DNA (384bp) protein (128aa)
Putative uncharacterized protein nvie-Pro1-30 Tax=Nitrososphaera phage Pro-Nvie1 RepID=F8K9Q1_9VIRU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16964.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_4807_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(6054..6431)
DNA (378bp) protein (126aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKL7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59027.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_4807_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

6705..8360
DNA (1656bp) protein (552aa)
sdhA; succinate dehydrogenase flavoprotein subunit/fumarate reductase (EC:1.3.99.1)
Succinate dehydrogenase flavoprotein subunit/fumarate reductase {ECO:0000313|EMBL:AFU59028.1}; EC=1.3.99.1 {ECO:0000313|EMBL:AFU59028.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Succinate dehydrogenase flavoprotein subunit/fumarate reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIW2_NITGG
PLM3-1_170_b2_sep16_scaffold_4807_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

8362..8805
DNA (444bp) protein (148aa)
sdhC; succinate dehydrogenase/fumarate reductase (EC:1.3.99.1)
Putative succinate dehydrogenase/fumarate reductase {ECO:0000313|EMBL:AFU59029.1}; EC=1.3.99.1 {ECO:0000313|EMBL:AFU59029.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative succinate dehydrogenase/fumarate reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INA4_NITGG
PLM3-1_170_b2_sep16_scaffold_4807_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

8809..9165
DNA (357bp) protein (119aa)
sdhD; succinate dehydrogenase/fumarate reductase (EC:1.3.99.1)
Putative succinate dehydrogenase/fumarate reductase {ECO:0000313|EMBL:AFU59030.1}; EC=1.3.99.1 {ECO:0000313|EMBL:AFU59030.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative succinate dehydrogenase/fumarate reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGR7_NITGG
PLM3-1_170_b2_sep16_scaffold_4807_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

9166..9423
DNA (258bp) protein (86aa)
sdhB; FeS-center protein of succinate dehydrogenase/fumarate reductase (EC:1.3.99.1)
FeS-center protein of succinate dehydrogenase/fumarate reductase {ECO:0000313|EMBL:AFU59031.1}; EC=1.3.99.1 {ECO:0000313|EMBL:AFU59031.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
FeS-center protein of succinate dehydrogenase/fumarate reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICC3_NITGG
Displaying 13 items

View Taxonomy