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PLM3-1_170_b2_sep16_scaffold_2016

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_2016_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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355..972
DNA (618bp) protein (206aa)
atpE; archaeal A1A0-type ATP synthase, subunit E (EC:3.6.3.14)
V-type proton ATPase subunit E Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJB0_NITGG
V-type proton ATPase subunit E {ECO:0000256|HAMAP-Rule:MF_00311}; V-ATPase subunit E {ECO:0000256|HAMAP-Rule:MF_00311}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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974..1612
DNA (639bp) protein (213aa)
atpA; archaeal A1A0-type ATP synthase, subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
V-type ATP synthase alpha chain Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFG1_NITGG
PLM3-1_170_b2_sep16_scaffold_2016_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3108..3962
DNA (855bp) protein (285aa)
atpA; archaeal A1A0-type ATP synthase, subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
V-type ATP synthase alpha chain Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFG1_NITGG
PLM3-1_170_b2_sep16_scaffold_2016_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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4015..5343
DNA (1329bp) protein (443aa)
atpB; archaeal A1A0-type ATP synthase, subunit B (EC:3.6.3.14)
V-type ATP synthase beta chain Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM91_NITGG
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5346..6020
DNA (675bp) protein (225aa)
atpD; archaeal A1A0-type ATP synthase, subunit D (EC:3.6.3.14)
V-type ATP synthase subunit D Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL19_NITGG
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_6
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6175..6402
DNA (228bp) protein (76aa)
Protein of unknown function (DUF2283)
Uncharacterized protein {ECO:0000313|EMBL:AIF82770.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_2016_7

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6785..7111
DNA (327bp) protein (109aa)
H-ATPase subunit chain K (ATPVK, ntpK) {ECO:0000313|EMBL:AIF08863.1}; EC=3.6.3.14 {ECO:0000313|EMBL:AIF08863.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_33_B12.;"
H+transporting two-sector ATPase subunit C; K02124 V-type H+-transporting ATPase subunit K [EC:3.6.3.14] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ATP synthase subunit C
PLM3-1_170_b2_sep16_scaffold_2016_8
unknown

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comp(7179..7448)
DNA (270bp) protein (90aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2016_9

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7545..7820
DNA (276bp) protein (92aa)
Looped-hinge helix DNA binding domain, AbrB family Tax=mine drainage metagenome RepID=T1BIK9_9ZZZZ
Looped-hinge helix DNA binding domain, AbrB family {ECO:0000313|EMBL:EQD53955.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SpoVT/AbrB domain-containing protein
PLM3-1_170_b2_sep16_scaffold_2016_10
unknown

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7774..7992
DNA (219bp) protein (73aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2016_11
RBG_13_Lokiarchaeota_45_8_curated, Lokiarchaeota, Archaea

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7989..8231
DNA (243bp) protein (81aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
nucleic acid-binding protein
Tax=RBG_13_Lokiarchaeota_45_8_curated
PLM3-1_170_b2_sep16_scaffold_2016_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8311..10428
DNA (2118bp) protein (706aa)
atpI; archaeal A1A0-type ATP synthase, subunit I (EC:3.6.3.14)
Archaeal A1A0-type ATP synthase, subunit I Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJB3_NITGG
V-type ATP synthase subunit I {ECO:0000256|RuleBase:RU361189}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10793..11872
DNA (1080bp) protein (360aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGD7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57893.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11886..12371
DNA (486bp) protein (162aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIJ1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57892.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_15
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12557..13609)
DNA (1053bp) protein (351aa)
atpC; archaeal A1A0-type ATP synthase, subunit C (EC:3.6.3.14)
Archaeal A1A0-type ATP synthase, subunit C {ECO:0000313|EMBL:AIC16557.1}; EC=3.6.3.14 {ECO:0000313|EMBL:AIC16557.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Archaeal A1A0-type ATP synthase, subunit C Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFG7_NITGG
PLM3-1_170_b2_sep16_scaffold_2016_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14081..14515
DNA (435bp) protein (145aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL23_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60113.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14575..14823
DNA (249bp) protein (83aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJB8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60115.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_18
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(14843..15379)
DNA (537bp) protein (179aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84966.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_2016_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(15496..16053)
DNA (558bp) protein (186aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGD8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58865.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(16515..16976)
DNA (462bp) protein (154aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKZ1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59222.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(17074..17613)
DNA (540bp) protein (180aa)
pyrI; aspartate carbamoyltransferase regulatory subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase regulatory chain Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM94_NITGG
Aspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_22
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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17851..18162
DNA (312bp) protein (104aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037489B7
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3-1_170_b2_sep16_scaffold_2016_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(19162..20298)
DNA (1137bp) protein (379aa)
Thiol-disulfide isomerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INX2_NITGG
thiol-disulfide isomerase
Thiol-disulfide isomerase {ECO:0000313|EMBL:AFU60119.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(20295..21071)
DNA (777bp) protein (259aa)
Disulfide bond oxidoreductase D family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJC3_NITGG
ccdA; disulfide bond oxidoreductase D family protein
Disulfide bond oxidoreductase D family protein {ECO:0000313|EMBL:AFU60120.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(21185..21505)
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFH9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60121.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2016_26
unknown

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comp(21534..21632)
DNA (99bp) protein (33aa)

This feature has no annotations

Displaying 26 items

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