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PLM3-1_170_b2_sep16_scaffold_2605

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_2605_1
unknown

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3..392
DNA (390bp) protein (130aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2605_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1187..1600
DNA (414bp) protein (138aa)
Putative methylmalonyl-CoA epimerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILC6_NITGG
methylmalonyl-CoA epimerase
Putative methylmalonyl-CoA epimerase {ECO:0000313|EMBL:AFU59427.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1655..2581
DNA (927bp) protein (309aa)
asparagine synthase (EC:6.3.5.4)
Putative asparagine synthase {ECO:0000313|EMBL:AFU59428.1}; EC=6.3.5.4 {ECO:0000313|EMBL:AFU59428.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative asparagine synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJN6_NITGG
PLM3-1_170_b2_sep16_scaffold_2605_4
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2851..3570
DNA (720bp) protein (240aa)
ABC efflux transporter, ATP-binding protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHK5_NITGG
ABC efflux transporter, ATP-binding protein
ABC efflux transporter, ATP-binding protein {ECO:0000313|EMBL:AIC17132.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_2605_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3567..5042
DNA (1476bp) protein (492aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDF4_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59431.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

5039..6286
DNA (1248bp) protein (416aa)
ABC efflux transporter, FtsX-domain permease protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILC9_NITGG
ABC efflux transporter, FtsX-domain permease
ABC efflux transporter, FtsX-domain permease protein {ECO:0000313|EMBL:AFU59432.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(6425..6988)
DNA (564bp) protein (188aa)
Ammonia monooxygenase/methane monooxygenase, subunit C Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMG9_NITGG
amoC2; ammonia monooxygenase/methane monooxygenase subunit C
Ammonia monooxygenase/methane monooxygenase, subunit C {ECO:0000313|EMBL:AFU60272.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7345..8097)
DNA (753bp) protein (251aa)
Putative metallophosphoesterase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILD3_NITGG
metallophosphoesterase
Putative metallophosphoesterase {ECO:0000313|EMBL:AFU59437.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_9
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

8179..8751
DNA (573bp) protein (191aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJP1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC17125.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_2605_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

8786..9808
DNA (1023bp) protein (341aa)
icd; isocitrate/isopropylmalate dehydrogenase (EC:1.1.1.- 1.1.1.41)
Isocitrate/isopropylmalate dehydrogenase {ECO:0000313|EMBL:AFU59439.1}; EC=1.1.1.- {ECO:0000313|EMBL:AFU59439.1};; EC=1.1.1.41 {ECO:0000313|EMBL:AFU59439.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Isocitrate/isopropylmalate dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INI6_NITGG
PLM3-1_170_b2_sep16_scaffold_2605_11
unknown

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9882..10454
DNA (573bp) protein (191aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2605_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(10291..10992)
DNA (702bp) protein (234aa)
rsmA; ribosomal RNA small subunit methyltransferase A (EC:2.1.1.-)
Putative ribosomal RNA small subunit methyltransferase A {ECO:0000313|EMBL:AFU59441.1}; EC=2.1.1.- {ECO:0000313|EMBL:AFU59441.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative ribosomal RNA small subunit methyltransferase A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDG2_NITGG
PLM3-1_170_b2_sep16_scaffold_2605_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(11025..11666)
DNA (642bp) protein (214aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILD6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59442.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11699..12034)
DNA (336bp) protein (112aa)
Putative RNA polymerase Rpb4 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJP5_NITGG
rpb4; RNA polymerase Rpb4
Putative RNA polymerase Rpb4 {ECO:0000313|EMBL:AFU59443.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12031..12336)
DNA (306bp) protein (102aa)
50S ribosomal protein L21e Tax=Candidatus Nitrososphaera gargensis RepID=K0INI7_NITGG
rpl21e; 50S ribosomal protein L21e
50S ribosomal protein L21e {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00016423}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12366..13349)
DNA (984bp) protein (328aa)
DNA repair and recombination protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHL5_NITGG
radA3; DNA repair and recombination protein RadA
DNA repair and recombination protein RadA {ECO:0000313|EMBL:AIC17118.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_2605_17
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

13463..14020
DNA (558bp) protein (186aa)
amoB; ammonia monooxygenase subunit B (EC:1.14.99.39)
Ammonia monooxygenase subunit B {ECO:0000313|EMBL:AIC17117.1}; EC=1.14.99.39 {ECO:0000313|EMBL:AIC17117.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Ammonia monooxygenase subunit B Tax=uncultured archaeon RepID=I3RKW6_9ARCH
PLM3-1_170_b2_sep16_scaffold_2605_18
Methanocaldococcus villosus, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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14133..14984
DNA (852bp) protein (284aa)
Glycosyl transferase family protein Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6UV38_9EURY
Glycosyl transferase family protein {ECO:0000313|EMBL:ENN96229.1}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus villosus KIN24-T80.;"
family 2 glycosyl transferase
PLM3-1_170_b2_sep16_scaffold_2605_19

Not on your lists

15069..16052
DNA (984bp) protein (328aa)
Radical SAM domain-containing protein Tax=uncultured archaeon RepID=I3RKV8_9ARCH
Radical SAM domain-containing protein {ECO:0000313|EMBL:AFK24968.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
radical SAM domain-containing protein
PLM3-1_170_b2_sep16_scaffold_2605_trna_1
unknown

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16096..16169
DNA (74bp)
transferRNA Pro
PLM3-1_170_b2_sep16_scaffold_2605_20
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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16324..17052
DNA (729bp) protein (243aa)
Putative methyltransferase, FkbM family Tax=Waddlia chondrophila 2032/99 RepID=F8LBK8_9CHLA
putative Methyltransferase FkbM family
Putative Methyltransferase FkbM family {ECO:0000313|EMBL:AJM91322.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. D3C.;"
PLM3-1_170_b2_sep16_scaffold_2605_21

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comp(17192..17842)
DNA (651bp) protein (217aa)
amoA; ammonia monooxygenase subunit A (EC:1.14.99.39)
Ammonia-monooxygenase subunit A Tax=Archaea RepID=F4N9Y5_9ARCH
Ammonia monooxygenase {ECO:0000313|EMBL:AET36368.1}; Flags: Fragment;; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
PLM3-1_170_b2_sep16_scaffold_2605_22
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17960..18262)
DNA (303bp) protein (101aa)
Uncharacterized protein Tax=uncultured archaeon RepID=I3RKP3_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83037.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_2605_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(18360..19418)
DNA (1059bp) protein (353aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INJ0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59459.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

19507..19671
DNA (165bp) protein (55aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHP4_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59460.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

19782..20036
DNA (255bp) protein (85aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDI1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59461.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_26
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

20143..20364
DNA (222bp) protein (74aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILF3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59462.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_27
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(20327..20971)
DNA (645bp) protein (215aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJR7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59463.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2605_28
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

21309..22691
DNA (1383bp) protein (461aa)
UDP-glucose/GDP-mannose family dehydrogenase (EC:1.1.1.-)
UDP-glucose/GDP-mannose family dehydrogenase {ECO:0000313|EMBL:AFU59464.1}; EC=1.1.1.- {ECO:0000313|EMBL:AFU59464.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
UDP-glucose/GDP-mannose family dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INJ1_NITGG
PLM3-1_170_b2_sep16_scaffold_2605_29
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

22729..23436
DNA (708bp) protein (236aa)
S-methyl-5-thioribose-1-phosphate isomerase (EC:5.3.1.23)
Putative methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; MTNA-like protein {ECO:0000256|HAMAP-Rule:MF_01678}; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative methylthioribose-1-phosphate isomerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHQ3_NITGG
Displaying items 1-30 of 39 in total

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