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PLM3-1_170_b2_sep16_scaffold_1132

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1132_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(40..363)
DNA (324bp) protein (108aa)
Putative transcriptional regulator, ArsR family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM95_NITGG
arsR family transcriptional regulator
Putative transcriptional regulator, ArsR family {ECO:0000313|EMBL:AFU60122.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_2
unknown

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843..1376
DNA (534bp) protein (178aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1132_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1589..2950
DNA (1362bp) protein (454aa)
DEAD-box ATP-dependent RNA helicase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL30_NITGG
DEAD/DEAH box helicase
DEAD-box ATP-dependent RNA helicase {ECO:0000313|EMBL:AFU60123.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3001..3510
DNA (510bp) protein (170aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INX3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60124.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3540..3956
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJC8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60125.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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4147..4743
DNA (597bp) protein (199aa)
Putative adenylate kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFI4_NITGG
adenylate kinase
Putative adenylate kinase {ECO:0000313|EMBL:AFU60126.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_7
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

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4780..5313
DNA (534bp) protein (178aa)
Uncharacterized protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LER3_9BACT
hypothetical protein
Tax=RBG_16_Zixibacteria_48_11_curated
PLM3-1_170_b2_sep16_scaffold_1132_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5359..5772
DNA (414bp) protein (138aa)
Putative Sm-like ribonucleoprotein, core Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INX4_NITGG
Sm-like ribonucleoprotein, core
Putative Sm-like ribonucleoprotein, core {ECO:0000313|EMBL:AFU60129.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5775..7277
DNA (1503bp) protein (501aa)
tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase (EC:2.4.2.-)
tRNA-guanine(15) transglycosylase {ECO:0000256|HAMAP-Rule:MF_01634}; EC=2.4.2.48 {ECO:0000256|HAMAP-Rule:MF_01634};; 7-cyano-7-deazaguanine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01634}; Archaeal tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_01634}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
tRNA-guanine(15) transglycosylase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJD1_NITGG
PLM3-1_170_b2_sep16_scaffold_1132_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7219..7893
DNA (675bp) protein (225aa)
nfi; endonuclease V (EC:3.1.21.7)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Endonuclease V Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFJ0_NITGG
PLM3-1_170_b2_sep16_scaffold_1132_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8046..8954)
DNA (909bp) protein (303aa)
Transcription initiation factor IIB Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICB0_NITGG
tfb1; transcription initiation factor IIB
Transcription initiation factor IIB {ECO:0000313|EMBL:AFU57170.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9093..9386)
DNA (294bp) protein (98aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL37_NITGG
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:AFU60133.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9526..9744)
DNA (219bp) protein (73aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILA5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60278.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9857..10675
DNA (819bp) protein (273aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJD5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60135.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10678..11487
DNA (810bp) protein (270aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFJ5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60136.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11605..12786
DNA (1182bp) protein (394aa)
Putative beta-lactamase domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMA2_NITGG
beta-lactamase domain-containing protein
Putative beta-lactamase domain protein {ECO:0000313|EMBL:AFU60137.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_17
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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12786..12983
DNA (198bp) protein (66aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL41_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16505.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_1132_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12980..13336)
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INX6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60139.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13417..14766)
DNA (1350bp) protein (450aa)
cysS2; cysteine--tRNA ligase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Cysteine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJD9_NITGG
PLM3-1_170_b2_sep16_scaffold_1132_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(14844..15158)
DNA (315bp) protein (105aa)
Rieske (2Fe-2S) domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMA5_NITGG
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:AFU60142.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15268..15783
DNA (516bp) protein (172aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL43_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60143.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15820..17052
DNA (1233bp) protein (411aa)
ahcY2; adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase {ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|RuleBase:RU000548};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Adenosylhomocysteinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INX7_NITGG
PLM3-1_170_b2_sep16_scaffold_1132_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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17084..18466
DNA (1383bp) protein (461aa)
metG; methionine--tRNA ligase (EC:6.1.1.10)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Methionine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJE3_NITGG
PLM3-1_170_b2_sep16_scaffold_1132_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18611..19162
DNA (552bp) protein (184aa)
nicotinamide-nucleotide adenylyltransferase (EC:2.7.7.1)
Nicotinamide-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00243}; EC=2.7.7.1 {ECO:0000256|HAMAP-Rule:MF_00243};; NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00243}; NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00243}; NMN adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00243}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Nicotinamide-nucleotide adenylyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFK6_NITGG
PLM3-1_170_b2_sep16_scaffold_1132_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19372..20016
DNA (645bp) protein (215aa)
Putative mechanosensitive ion channel Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMA8_NITGG
mechanosensitive ion channel
Putative mechanosensitive ion channel {ECO:0000313|EMBL:AFU60147.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_26
RBG_16_Archaea_50_20_curated, Archaea

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20542..21348
DNA (807bp) protein (269aa)
Alpha/beta hydrolase fold bin=GWA2_Ignavibacteria_55_11 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
alpha/beta fold family hydrolase
Tax=RBG_16_Archaea_50_20_curated
PLM3-1_170_b2_sep16_scaffold_1132_27
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(21400..21627)
DNA (228bp) protein (76aa)
TRAM domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBW5_NITGG
Deoxyribonuclease/rho motif-related TRAM domain containing protein
Deoxyribonuclease/rho motif-related TRAM domain containing protein {ECO:0000313|EMBL:AIC15184.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_1132_28
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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21904..22632
DNA (729bp) protein (243aa)
Putative pirin family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INX8_NITGG
pirin family protein
Putative pirin family protein {ECO:0000313|EMBL:AFU60149.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_29
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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22616..23221
DNA (606bp) protein (202aa)
Putative NADPH-dependent FMN reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJE9_NITGG
NADPH-dependent FMN reductase
Putative NADPH-dependent FMN reductase {ECO:0000313|EMBL:AFU60150.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1132_30
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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23312..23698
DNA (387bp) protein (129aa)
Putative protease DO family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMB1_NITGG
protease DO family protein
Putative protease DO family protein {ECO:0000313|EMBL:AFU60152.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Displaying 30 items

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