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PLM3-1_170_b2_sep16_scaffold_1415

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1415_1
unknown

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comp(2..79)
DNA (78bp) protein (26aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1415_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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308..1384
DNA (1077bp) protein (359aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|RuleBase:RU004501}; EC=1.2.1.11 {ECO:0000256|RuleBase:RU004501};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Aspartate-semialdehyde dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I718_NITGG
asd; aspartate-semialdehyde dehydrogenase
PLM3-1_170_b2_sep16_scaffold_1415_3
unknown

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comp(1401..1532)
DNA (132bp) protein (44aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1415_4
unknown

Not on your lists

comp(1525..1695)
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1415_5
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1817..2281
DNA (465bp) protein (155aa)
Putative transcriptional regulator, AsnC family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILG5_NITGG
putative transcriptional regulator, AsnC family
Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:AIC16701.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_1415_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2328..3221
DNA (894bp) protein (298aa)
ctaB1; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Protoheme IX farnesyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBY9_NITGG
PLM3-1_170_b2_sep16_scaffold_1415_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3183..3743)
DNA (561bp) protein (187aa)
Ribosomal RNA small subunit methyltransferase Nep1 {ECO:0000256|HAMAP-Rule:MF_00554}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00554};; 16S rRNA (pseudouridine-N1-)-methyltransferase Nep1 {ECO:0000256|HAMAP-Rule:MF_00554}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Ribosomal RNA small subunit methyltransferase Nep1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I722_NITGG
ribosome biogenesis protein
PLM3-1_170_b2_sep16_scaffold_1415_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(3914..4342)
DNA (429bp) protein (143aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGX5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57067.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1415_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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4750..5205
DNA (456bp) protein (152aa)
30S ribosomal protein S19e Tax=Candidatus Nitrososphaera gargensis RepID=K0IGX8_NITGG
rps19e; 30S ribosomal protein S19e
R-protein S19e {ECO:0000313|EMBL:ADK26015.1}; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
PLM3-1_170_b2_sep16_scaffold_1415_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5210..5497
DNA (288bp) protein (96aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE27_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57073.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1415_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5568..6617
DNA (1050bp) protein (350aa)
adh4; putative NAD-dependent alcohol dehydrogenase (EC:1.1.1.1)
Putative NAD-dependent alcohol dehydrogenase {ECO:0000313|EMBL:AIC16707.1}; EC=1.1.1.1 {ECO:0000313|EMBL:AIC16707.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Putative NAD-dependent alcohol dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILH0_NITGG
PLM3-1_170_b2_sep16_scaffold_1415_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6658..7515
DNA (858bp) protein (286aa)
citE; citrate/citryl-CoA lyase (EC:4.1.3.6 4.1.3.34)
Putative citrate/ citryl-CoA lyase {ECO:0000313|EMBL:AFU57075.1}; EC=4.1.3.34 {ECO:0000313|EMBL:AFU57075.1};; EC=4.1.3.6 {ECO:0000313|EMBL:AFU57075.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative citrate/ citryl-CoA lyase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBZ8_NITGG
PLM3-1_170_b2_sep16_scaffold_1415_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7543..7731)
DNA (189bp) protein (63aa)
Putative 4-oxalocrotonate tautomerase family enzyme Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGY3_NITGG
4-oxalocrotonate tautomerase family enzyme
Putative 4-oxalocrotonate tautomerase family enzyme {ECO:0000313|EMBL:AFU57077.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1415_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7758..8606)
DNA (849bp) protein (283aa)
Arsenical resistance-3 family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE33_NITGG
arsenical resistance-3 family protein
Arsenical resistance-3 family protein {ECO:0000313|EMBL:AFU57078.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1415_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(8644..10392)
DNA (1749bp) protein (583aa)
pepF; oligoendopeptidase (EC:3.4.24.-)
Oligoendopeptidase, pepF/M3 family {ECO:0000313|EMBL:AFU57079.1}; EC=3.4.24.- {ECO:0000313|EMBL:AFU57079.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Oligoendopeptidase, pepF/M3 family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILH2_NITGG
PLM3-1_170_b2_sep16_scaffold_1415_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10464..10877
DNA (414bp) protein (138aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC01_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57080.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1415_17
unknown

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comp(10816..11118)
DNA (303bp) protein (101aa)
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1415_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11389..12375)
DNA (987bp) protein (329aa)
SCP domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILH6_NITGG
SCP domain-containing protein
SCP domain-containing protein {ECO:0000313|EMBL:AFU57084.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1415_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(12631..12855)
DNA (225bp) protein (75aa)
Putative beta-lactamase domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC06_NITGG
beta-lactamase domain-containing protein
Putative beta-lactamase domain protein {ECO:0000313|EMBL:AFU57085.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1415_20
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(12827..13918)
DNA (1092bp) protein (364aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2E624_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EPA06188.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia BG20.;"
RNA-metabolising metallo-beta-lactamase
PLM3-1_170_b2_sep16_scaffold_1415_21
unknown

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14097..14624
DNA (528bp) protein (176aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1415_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(14739..15326)
DNA (588bp) protein (196aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
GTP cyclohydrolase 1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC10_NITGG
PLM3-1_170_b2_sep16_scaffold_1415_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(15333..15980)
DNA (648bp) protein (216aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Archaeosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Radical SAM domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I746_NITGG
radical SAM domain-containing protein
PLM3-1_170_b2_sep16_scaffold_1415_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(16012..16773)
DNA (762bp) protein (254aa)
queC1; 7-cyano-7-deazaguanine synthase (EC:6.3.-.-)
7-cyano-7-deazaguanine synthase {ECO:0000313|EMBL:AFU57092.1}; EC=6.3.-.- {ECO:0000313|EMBL:AFU57092.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
7-cyano-7-deazaguanine synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGZ1_NITGG
PLM3-1_170_b2_sep16_scaffold_1415_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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16946..18184
DNA (1239bp) protein (413aa)
GTP binding protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILI1_NITGG
GTP binding protein
GTP binding protein {ECO:0000313|EMBL:AFU57094.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1415_26
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18189..19184
DNA (996bp) protein (332aa)
Putative metalloendopeptidase glycoprotease family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC21_NITGG
metalloendopeptidase glycoprotease family
Putative metalloendopeptidase glycoprotease family {ECO:0000313|EMBL:AFU57095.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1415_27
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(19168..19488)
DNA (321bp) protein (107aa)
GRAM domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I751_NITGG
GRAM domain-containing protein
GRAM domain-containing protein {ECO:0000313|EMBL:AFU57096.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1415_28
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(19757..19900)
DNA (144bp) protein (48aa)
Uncharacterized protein Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HE52_METFS
YHS domain-containing protein
YHS domain-containing protein {ECO:0000313|EMBL:AIC15527.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_1415_29
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19992..20192
DNA (201bp) protein (67aa)
Putative heavy metal transport/detoxification protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKS5_NITGG
copper chaperone
Copper chaperone {ECO:0000313|EMBL:AIF84739.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_1415_30
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(20209..22368)
DNA (2160bp) protein (720aa)
Copper-exporting P-type ATPase A {ECO:0000313|EMBL:AFU59143.1}; EC=3.6.3.- {ECO:0000313|EMBL:AFU59143.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
copA; copper-exporting P-type ATPase A (EC:3.6.3.-)
Copper-exporting P-type ATPase A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ63_NITGG
Displaying items 1-30 of 34 in total

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