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PLM3-1_170_b2_sep16_scaffold_3438

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_3438_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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3..269
DNA (267bp) protein (89aa)
Iron-sulfur cluster binding protein bin=GWC2_Methylomirabilis_70_24 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Iron-sulfur cluster binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3-1_170_b2_sep16_scaffold_3438_2
unknown

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277..744
DNA (468bp) protein (156aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3438_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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723..1010
DNA (288bp) protein (96aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3-1_170_b2_sep16_scaffold_3438_4
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1071..1742)
DNA (672bp) protein (224aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Leucyl/phenylalanyl-tRNA--protein transferase Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G5E6_9GAMM
Leucyl/phenylalanyl-tRNA--protein transferase
PLM3-1_170_b2_sep16_scaffold_3438_5
R_NC10_66_22, NC10, Bacteria

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comp(1825..2601)
DNA (777bp) protein (259aa)
Short-chain dehydrogenase/reductase SDR bin=GWD2_Deltaproteobacteria_55_8 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
short-chain dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3438_6
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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3056..3973
DNA (918bp) protein (306aa)
Putative hydride transferase bin=GWC2_Methylomirabilis_70_16 species=Streptomyces hygroscopicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3-1_170_b2_sep16_scaffold_3438_7
R_NC10_66_22, NC10, Bacteria

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4015..4800
DNA (786bp) protein (262aa)
Putative formate dehydrogenase family accessory protein (FdhD) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFY0_9BACT
formate dehydrogenase family accessory protein (FdhD)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3438_8
R_NC10_66_22, NC10, Bacteria

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5016..7052
DNA (2037bp) protein (679aa)
Twin-arginine translocation pathway signal Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR4_MESSB
twin-arginine translocation pathway signal
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3438_9
RBG_16_NC10_65_8_curated, NC10, Bacteria

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7130..8119
DNA (990bp) protein (330aa)
Binding-protein-dependent transport systems inner membrane component Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR1_MESSB
binding-protein-dependent transport systems inner membrane component
Tax=RBG_16_NC10_65_8_curated
PLM3-1_170_b2_sep16_scaffold_3438_10
R_NC10_66_22, NC10, Bacteria

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8083..8913
DNA (831bp) protein (277aa)
Binding-protein-dependent transport systems inner membrane component Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR0_MESSB
binding-protein-dependent transport systems inner membrane component
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3438_11
R_NC10_66_22, NC10, Bacteria

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8927..9250
DNA (324bp) protein (108aa)
Binding-protein-dependent transport systems inner membrane component Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR0_MESSB
binding-protein-dependent transport systems inner membrane component
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3438_12
R_NC10_66_22, NC10, Bacteria

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9342..10361
DNA (1020bp) protein (340aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AQ9_MESSB
oligopeptide/dipeptide ABC transporter, ATPase subunit
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3438_13
R_NC10_66_22, NC10, Bacteria

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10502..11506
DNA (1005bp) protein (335aa)
peptide ABC transporter ATP-binding protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626752
oligopeptide/dipeptide ABC transporter ATPase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3438_14
R_NC10_66_22, NC10, Bacteria

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11769..12653
DNA (885bp) protein (295aa)
Dihydrodipicolinate synthase Tax=Rhodopirellula sp. SWK7 RepID=M5TBN0_9PLAN
dihydrodipicolinate synthase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3438_15
R_WOR_2_68_15, WOR-2, Bacteria

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comp(12854..13072)
DNA (219bp) protein (73aa)
Putative uncharacterized protein Tax=sediment metagenome RepID=D9PL67_9ZZZZ
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
PLM3-1_170_b2_sep16_scaffold_3438_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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14427..15497
DNA (1071bp) protein (357aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Massilia timonae genus=Massilia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3-1_170_b2_sep16_scaffold_3438_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

15478..16356
DNA (879bp) protein (293aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Ralstonia solanacearum genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3-1_170_b2_sep16_scaffold_3438_18
RBG_16_NC10_65_8_curated, NC10, Bacteria

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comp(16670..16852)
DNA (183bp) protein (61aa)
Putative uncharacterized protein bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=RBG_16_NC10_65_8_curated
Displaying 18 items

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