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PLM3-1_170_b2_sep16_scaffold_3588

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_3588_1
unknown

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2..103
DNA (102bp) protein (34aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3588_2
R_NC10_66_22, NC10, Bacteria

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334..1395
DNA (1062bp) protein (354aa)
type IV pilus assembly protein PilM bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
type IV pilus assembly protein PilM
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_3
R_NC10_66_22, NC10, Bacteria

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1397..1948
DNA (552bp) protein (184aa)
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN bin=bin3_NC10 species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
Pili assembly protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_4
R_NC10_66_22, NC10, Bacteria

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1963..2571
DNA (609bp) protein (203aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_5
R_NC10_66_22, NC10, Bacteria

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2555..3127
DNA (573bp) protein (191aa)
Putative Type IV pilus assembly protein PilP bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_6
R_NC10_66_22, NC10, Bacteria

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3131..5566
DNA (2436bp) protein (812aa)
type IV pilus secretin PilQ; K02666 type IV pilus assembly protein PilQ bin=bin3_NC10 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
type IV pilus secretin PilQ
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_7
R_NC10_66_22, NC10, Bacteria

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5723..5911
DNA (189bp) protein (63aa)
chorismate synthase (EC:4.2.3.5)
chorismate synthase Tax=Salisaeta longa RepID=UPI0003B57679
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

5908..6951
DNA (1044bp) protein (348aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFD3_9BACT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_9
unknown

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comp(6960..7298)
DNA (339bp) protein (113aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3588_10
R_NC10_66_22, NC10, Bacteria

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comp(7298..7717)
DNA (420bp) protein (140aa)
hypothetical protein Tax=Hoeflea sp. 108 RepID=UPI000364D768
glyoxalase family protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(8038..9084)
DNA (1047bp) protein (349aa)
Farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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9378..10079
DNA (702bp) protein (234aa)
Glycosyl transferase family 2 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFI8_9BACT
glycosyl transferase family 2
Glycosyl transferase family 2 {ECO:0000313|EMBL:CBE68519.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_3588_13
R_NC10_66_22, NC10, Bacteria

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10161..11987
DNA (1827bp) protein (609aa)
PepF/M3 family oligoendopeptidase bin=GWD2_Deltaproteobacteria_55_8 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
oligoendopeptidase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_14
R_NC10_66_22, NC10, Bacteria

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11990..12751
DNA (762bp) protein (254aa)
TATDN3; TatD DNase domain containing 3; K03424 TatD DNase family protein [EC:3.1.21.-] bin=bin3_NC10 species=Zonotrichia albicollis genus=Zonotrichia taxon_order=Passeriformes taxon_class=Aves phylum=Chordata tax=bin3_NC10 organism_group=NC10
TatD-related deoxyribonuclease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_3588_15
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(12788..13777)
DNA (990bp) protein (330aa)
Transporter, major facilitator family protein Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G5R8_9DELT
sugar phosphate permease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 15 items

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