ggKbase home page

PLM3-1_170_b2_sep16_scaffold_1801

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1801_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(3..983)
DNA (981bp) protein (327aa)
rnjA; ribonuclease J 1 (RNase J1) (EC:3.1.-.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rnjA; ribonuclease J 1 (RNase J1) (EC:3.1.-.-)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_2
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1018..3441)
DNA (2424bp) protein (808aa)
lon; ATP-dependent protease La (EC:3.4.21.53)
Lon protease Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK75_9BACT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4002..4922)
DNA (921bp) protein (307aa)
galU; glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
Glucose-1-phosphate uridylyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK76_9BACT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4937..5188)
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=Geobacter sp. (strain M21) RepID=C6E896_GEOSM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

5626..5796
DNA (171bp) protein (57aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_6
unknown

Not on your lists

5894..6154
DNA (261bp) protein (87aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1801_7
R_NC10_66_22, NC10, Bacteria

Not on your lists

6393..7067
DNA (675bp) protein (225aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

7409..9727
DNA (2319bp) protein (773aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

10101..10316
DNA (216bp) protein (72aa)
cspA; Cold shock protein, DNA binding
cspA; Cold shock protein, DNA binding bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

10494..11414
DNA (921bp) protein (307aa)
ABC transporter; K09695 lipooligosaccharide transport system ATP-binding protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

11426..12229
DNA (804bp) protein (268aa)
ABC transporter permease protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z1L1_METPS
ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_12
R_NC10_66_22, NC10, Bacteria

Not on your lists

12264..12671
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=Mycobacterium xenopi RIVM700367 RepID=I0S2I8_MYCXE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

12679..13731
DNA (1053bp) protein (351aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000364E6C8
malate/L-lactate dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1801_14
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13836..14735)
DNA (900bp) protein (300aa)
dihydrodipicolinate synthase/N-acetylneuraminate lyase (EC:4.2.1.52)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:CCG04436.1}; EC=4.2.1.52 {ECO:0000313|EMBL:CCG04436.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
Dihydrodipicolinate synthase/N-acetylneuraminate lyase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RU26_BLASD
PLM3-1_170_b2_sep16_scaffold_1801_15
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(14776..15021)
DNA (246bp) protein (82aa)
hypothetical protein Tax=Nocardiopsis gilva RepID=UPI00034C6145
OsmC family protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 15 items

View Taxonomy