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PLM3-1_170_b2_sep16_scaffold_3424

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_3424_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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77..850
DNA (774bp) protein (258aa)
Peptidyl-prolyl cis-trans isomerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE41_NITGG
FKBP-type peptidyl-prolyl cis-trans isomerase
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_3424_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(917..1951)
DNA (1035bp) protein (345aa)
egsA; glycerol-1-phosphate dehydrogenase (EC:1.1.1.261)
Glycerol-1-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00497, ECO:0000256|SAAS:SAAS00015263}; Short=G1P dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00497};; Short=G1PDH {ECO:0000256|HAMAP-Rule:MF_00497};; EC=1.1.1.261 {ECO:0000256|HAMAP-Rule:MF_00497, ECO:0000256|SAAS:SAAS00015268};; Enantiomeric glycerophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00497}; sn-glycerol-1-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00497}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glycerol-1-phosphate dehydrogenase [NAD(P)+] Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJF2_NITGG
PLM3-1_170_b2_sep16_scaffold_3424_3
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2176..4050
DNA (1875bp) protein (625aa)
Beta-lactamase domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH94_NITGG
Putative beta-lactamase domain-containing metal-dependent RNase
Putative beta-lactamase domain-containing metal-dependent RNase {ECO:0000313|EMBL:AIC14228.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_3424_4
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4063..4335)
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia RepID=F3KLR7_9ARCH
putative protein of unknown function DUF552
Uncharacterized protein {ECO:0000313|EMBL:AIC14227.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_3424_5
unknown

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comp(4725..5057)
DNA (333bp) protein (111aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3424_6
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5054..6361)
DNA (1308bp) protein (436aa)
Putative amidophosphoribosyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHM1_NITGG
glutamine phosphoribosylpyrophosphate amidotransferase
Putative amidophosphoribosyltransferase {ECO:0000313|EMBL:AIC14957.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_3424_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6558..7757
DNA (1200bp) protein (400aa)
GTP binding protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILI1_NITGG
GTP binding protein
GTP binding protein {ECO:0000313|EMBL:AFU57094.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_3424_8
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

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7763..8119
DNA (357bp) protein (119aa)
Putative metalloendopeptidase glycoprotease family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC21_NITGG
Suspect SCG annotation. See neighboring gene [PLM3-1_170_b2_sep16_scaffold_3424_9].
putative universal archaeal protein Kae1
Putative universal archaeal protein Kae1 {ECO:0000313|EMBL:AJA92048.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Candidatus Nitrosopelagicus brevis.;"
PLM3-1_170_b2_sep16_scaffold_3424_9
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8136..8630
DNA (495bp) protein (165aa)
Putative metalloendopeptidase glycoprotease family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC21_NITGG
putative glycoprotease family metalloendopeptidase
Putative glycoprotease family metalloendopeptidase {ECO:0000313|EMBL:AIC15598.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_3424_10
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8753..9373
DNA (621bp) protein (207aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILX7_NITGG
plastocyanin
Plastocyanin {ECO:0000313|EMBL:AIF82214.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_3424_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9644..9979)
DNA (336bp) protein (112aa)
GRAM domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I751_NITGG
GRAM domain-containing protein
GRAM domain-containing protein {ECO:0000313|EMBL:AFU57096.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_3424_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10129..10581
DNA (453bp) protein (151aa)
Putative Mn2+-dependent serine/threonine protein kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH02_NITGG
Mn2+-dependent serine/threonine protein kinase
Putative Mn2+-dependent serine/threonine protein kinase {ECO:0000313|EMBL:AFU57097.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_3424_13
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10759..11322
DNA (564bp) protein (188aa)
dITPase (EC:3.6.1.19)
DITPase {ECO:0000313|EMBL:AIF84797.1}; EC=3.6.1.19 {ECO:0000313|EMBL:AIF84797.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative nucleoside-triphosphatase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE54_NITGG
PLM3-1_170_b2_sep16_scaffold_3424_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11332..12372)
DNA (1041bp) protein (347aa)
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase {ECO:0000256|HAMAP-Rule:MF_01921}; EC=4.1.3.44 {ECO:0000256|HAMAP-Rule:MF_01921};; tRNA wyosine derivatives biosynthesis protein Taw1 {ECO:0000256|HAMAP-Rule:MF_01921}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Wyosine base formation domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILI4_NITGG
wyosine base formation domain-containing protein
PLM3-1_170_b2_sep16_scaffold_3424_15
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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12592..13404
DNA (813bp) protein (271aa)
NIFsuperfamily domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC27_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84795.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_3424_trna_1
unknown

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13459..13561
DNA (103bp)
transferRNA His
PLM3-1_170_b2_sep16_scaffold_3424_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13644..13916)
DNA (273bp) protein (91aa)
Putative UDP-glucuronosyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I6V2_NITGG
putative UDP-glucuronosyltransferase
Putative UDP-glucuronosyltransferase {ECO:0000313|EMBL:AIC16367.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Displaying 17 items

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