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PLM3-1_170_b2_sep16_scaffold_3130

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_3130_1
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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107..1066
DNA (960bp) protein (320aa)
RNA polymerase sigma factor bin=GWA2_OP3_52_12 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
sigma-70 region 2 domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_3130_2
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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1243..1695
DNA (453bp) protein (151aa)
Uncharacterized protein bin=GWA2_OP3_52_12 species=Bradyrhizobium sp. WSM1253 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
carbon monoxide dehydrogenase subunit G
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_3130_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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1697..2557
DNA (861bp) protein (287aa)
Molybdopterin dehydrogenase, FAD-binding bin=GWD2_Deltaproteobacteria_55_8 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
molybdopterin dehydrogenase, FAD-binding
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3130_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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2584..3090
DNA (507bp) protein (169aa)
(2Fe-2S)-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
(2Fe-2S)-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3130_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3200..4621)
DNA (1422bp) protein (474aa)
Putative carboxylyase-like protein (Fragment) bin=GWD2_Deltaproteobacteria_55_8 species=Clostridia bacterium enrichment culture clone BF genus=unknown taxon_order=unknown taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
menaquinone biosynthesis decarboxylase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3130_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4935..5855)
DNA (921bp) protein (307aa)
ABC-type transport system bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter permease
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_3130_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5858..6790)
DNA (933bp) protein (311aa)
sulfate-transporting ATPase (EC:3.6.3.25)
Phosphonate-transporting ATPase bin=GWA2_OP3_52_12 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3130_8
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6787..8031)
DNA (1245bp) protein (415aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3130_9
unknown

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8214..8630
DNA (417bp) protein (139aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3130_10
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8525..8962)
DNA (438bp) protein (146aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
D-tyrosyl-tRNA(Tyr) deacylase Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=DTD_HELMI
D-tyrosyl-tRNA(Tyr) deacylase
PLM3-1_170_b2_sep16_scaffold_3130_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9110..9901
DNA (792bp) protein (264aa)
Prolipoprotein diacylglyceryl transferase bin=GWD2_Deltaproteobacteria_55_8 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
prolipoprotein diacylglyceryl transferase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3130_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10045..10311
DNA (267bp) protein (89aa)
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3130_13
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10417..10734
DNA (318bp) protein (106aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_3130_14
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10839..13079
DNA (2241bp) protein (747aa)
UvrABC system protein B bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
excinuclease ABC subunit B
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 14 items

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