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PLM3-1_170_b2_sep16_scaffold_3972

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_3972_1
unknown

Not on your lists

comp(3..194)
DNA (192bp) protein (64aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3972_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(548..1621)
DNA (1074bp) protein (358aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3972_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1729..2787)
DNA (1059bp) protein (353aa)
UPI0002776920 related cluster bin=GWD2_Deltaproteobacteria_55_8 species=Marinobacter sp. BSs20148 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
uncharacterized protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3972_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2821..3393)
DNA (573bp) protein (191aa)
Uncharacterized protein Tax=Rhizobium sp. CF080 RepID=J2KEH0_9RHIZ
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3972_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3941..5389)
DNA (1449bp) protein (483aa)
UbiD family decarboxylases bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ubiD_R; UbiD-like subunit of potential (de) carboxylase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3972_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5404..6207)
DNA (804bp) protein (268aa)
id=2104314 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_3972_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6378..7295)
DNA (918bp) protein (306aa)
Dihydrodipicolinate synthase (EC:4.3.3.7)
Dihydrodipicolinate synthetase bin=GWD2_Deltaproteobacteria_55_8 species=Clostridium papyrosolvens genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3972_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7516..8031
DNA (516bp) protein (172aa)
Peptidyl-prolyl cis-trans isomerase cyp18 (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase Tax=Moraxella catarrhalis RepID=D5VB75_MORCR
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3972_9
GWA2_OD1_50_22_partial, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8084..8815)
DNA (732bp) protein (244aa)
Coenzyme A transferase Tax=Desulfococcus multivorans DSM 2059 RepID=S7TTS3_DESML
Coenzyme A transferase {ECO:0000313|EMBL:KKW17226.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Magasanikbacteria) bacterium GW2011_GWA2_50_22.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_3972_10
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8943..9377)
DNA (435bp) protein (145aa)
Uncharacterized protein, possibly involved in utilization of glycolate and propanediol bin=GWC2_Methylomirabilis_70_16 species=uncultured nuHF2 cluster bacterium HF0500_39O04 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
PLM3-1_170_b2_sep16_scaffold_3972_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9633..10544)
DNA (912bp) protein (304aa)
3-oxoadipate CoA-transferase Tax=Bacillus alcalophilus ATCC 27647 RepID=J8TPI0_BACAO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3972_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11087..11338
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JTE2_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3-1_170_b2_sep16_scaffold_3972_13
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11578..11850
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4P5_9BACT
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM3-1_170_b2_sep16_scaffold_3972_14
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11949..12227
DNA (279bp) protein (93aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_3972_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12328..12522
DNA (195bp) protein (65aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_3972_16
Arthrospira platensis, Arthrospira, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

12562..12753
DNA (192bp) protein (64aa)
Uncharacterized protein Tax=Arthrospira platensis C1 RepID=K1W3H7_ARTPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKD07541.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.;" source="Arthrospira platensis C1.;"
PLM3-1_170_b2_sep16_scaffold_3972_17
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13443..14468
DNA (1026bp) protein (342aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3972_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14623..15723
DNA (1101bp) protein (367aa)
Ornithine cyclodeaminase Tax=Marinobacter algicola DG893 RepID=A6F004_9ALTE
ornithine cyclodeaminase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3972_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

16085..17383
DNA (1299bp) protein (433aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWB2_Nitrospirae_rel_47_37 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3-1_170_b2_sep16_scaffold_3972_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

17404..18204
DNA (801bp) protein (267aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component bin=GWB2_Nitrospirae_rel_47_37 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
putative nitrate transport system permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3-1_170_b2_sep16_scaffold_3972_21
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

18208..19056
DNA (849bp) protein (283aa)
Nitrate transport ATP-binding subunits C and D bin=GWB2_Nitrospirae_rel_47_37 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
nitrate ABC transporter ATPase
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3-1_170_b2_sep16_scaffold_3972_22
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

19119..19577
DNA (459bp) protein (153aa)
Cyanate hydratase bin=GWB2_Nitrospirae_rel_47_37 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
cyanate hydratase
Tax=GWB2_Nitrospirae_47_37_curated
PLM3-1_170_b2_sep16_scaffold_3972_23
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19584..21026)
DNA (1443bp) protein (481aa)
Fumarate reductase/succinate dehyfrogenase, flavoprotein subunit Tax=Azotobacter vinelandii RepID=C1DFD0_AZOVD
fumarate reductase/succinate dehyfrogenase, flavoprotein subunit
Fumarate reductase/succinate dehyfrogenase, flavoprotein subunit {ECO:0000313|EMBL:ACO78333.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
Displaying 23 items

View Taxonomy