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PLM3-1_170_b2_sep16_scaffold_178

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_178_1
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..151)
DNA (150bp) protein (50aa)
FecR domain protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM3-1_170_b2_sep16_scaffold_178_2
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

764..1444
DNA (681bp) protein (227aa)
Putative uncharacterized protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5UTB7_ROSS1
hypothetical protein
Tax=RBG_16_RIF03_38_10_curated
PLM3-1_170_b2_sep16_scaffold_178_3
RHI_OP11_Daviesbacteria_37_11, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

1450..1893
DNA (444bp) protein (148aa)
hypothetical protein Tax=Bacillus coagulans RepID=UPI0002FA77A0
Tax=RIFCSPHIGHO2_12_FULL_OP11_Daviesbacteria_37_11_curated
PLM3-1_170_b2_sep16_scaffold_178_4
unknown

Not on your lists

2603..2917
DNA (315bp) protein (105aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_178_5

Not on your lists

2977..3828
DNA (852bp) protein (284aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN09741.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen bin=GWD2_Deltaproteobacteria_55_8 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
resA; thiol-disulfide oxidoreductase ResA
PLM3-1_170_b2_sep16_scaffold_178_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4519..4866
DNA (348bp) protein (116aa)
Uncharacterized protein Tax=Oscillatoria sp. PCC 6506 RepID=D8G6E5_9CYAN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3-1_170_b2_sep16_scaffold_178_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4863..5096
DNA (234bp) protein (78aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_178_8
unknown

Not on your lists

5751..6395
DNA (645bp) protein (215aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_178_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6612..7733
DNA (1122bp) protein (374aa)
Chaperone protein DnaJ bin=GWD2_Deltaproteobacteria_55_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
DnaJ-class molecular chaperone with C-terminal Zn finger domain
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_178_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7748..8041
DNA (294bp) protein (98aa)
id=1985031 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_178_11
R_OD1_Wolfebacteria_44_18, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(8124..8480)
DNA (357bp) protein (119aa)
hypothetical protein bin=bin8_Chloro species=Ruminococcus sp. CAG:330 genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_44_18_curated
PLM3-1_170_b2_sep16_scaffold_178_12
GWA2_OD1_44_13b, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(8529..9071)
DNA (543bp) protein (181aa)
Band 7 protein {ECO:0000313|EMBL:KKT40992.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_13b.;"
PLM3-1_170_b2_sep16_scaffold_178_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9323..9616
DNA (294bp) protein (98aa)
id=1985031 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_178_14
unknown

Not on your lists

comp(10051..10245)
DNA (195bp) protein (65aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_178_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10292..10660)
DNA (369bp) protein (123aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_178_16
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10901..11218)
DNA (318bp) protein (106aa)
RNA-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rbpA; RNA-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_178_17

Not on your lists

12045..12392
DNA (348bp) protein (116aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AB-629-O05 RepID=UPI00037578E2
Uncharacterized protein {ECO:0000313|EMBL:KKM79233.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_178_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12637..13791)
DNA (1155bp) protein (385aa)
Uncharacterized protein family UPF0020 bin=GWD2_Deltaproteobacteria_55_8 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative RNA methylase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_178_19
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14367..15698
DNA (1332bp) protein (444aa)
Macrolide-efflux protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LW71_SYNAS
macrolide-efflux protein
Macrolide-efflux protein {ECO:0000313|EMBL:ABC78331.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
PLM3-1_170_b2_sep16_scaffold_178_20
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15730..15912)
DNA (183bp) protein (61aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_178_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16039..16533)
DNA (495bp) protein (165aa)
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
CarD family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_178_22
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16564..16965)
DNA (402bp) protein (134aa)
Sensor histidine kinase Tax=Pseudomonas aeruginosa 18A RepID=M1Y0W9_PSEAI
two-component sensor
Probable two-component sensor {ECO:0000313|EMBL:ABR84848.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain PA7).;"
PLM3-1_170_b2_sep16_scaffold_178_23
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17209..18156)
DNA (948bp) protein (316aa)
Glycosidase bin=GWD2_Deltaproteobacteria_55_8 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glycosidase-like protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_178_24
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18119..20440)
DNA (2322bp) protein (774aa)
Glycosyltransferase, group 1 family protein Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0G995_9LEPT
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_178_25
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20762..21358)
DNA (597bp) protein (199aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
toluene tolerance Ttg2 superfamily protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_178_26
unknown

Not on your lists

21373..21549
DNA (177bp) protein (59aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_178_27
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21555..23039)
DNA (1485bp) protein (495aa)
nuoN2; NADH dehydrogenase I subunit N (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit N bin=GWD2_Deltaproteobacteria_55_8 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_178_28
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23043..24563)
DNA (1521bp) protein (507aa)
NADH dehydrogenase I subunit M bin=GWD2_Deltaproteobacteria_55_8 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NADH dehydrogenase subunit M
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_178_29
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24586..26628)
DNA (2043bp) protein (681aa)
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5)
NADH dehydrogenase I subunit L bin=GWD2_Deltaproteobacteria_55_8 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_178_30
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26762..27085)
DNA (324bp) protein (108aa)
NADH-quinone oxidoreductase subunit K bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NADH-ubiquinone oxidoreductase subunit 4L
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying items 1-30 of 43 in total

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