ggKbase home page

PLM3-1_170_b2_sep16_scaffold_635

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_635_1
unknown

Not on your lists

comp(443..712)
DNA (270bp) protein (90aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_635_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(833..1783)
DNA (951bp) protein (317aa)
glpX; fructose-1,6-bisphosphatase, class II (EC:3.1.3.11)
Fructose-1,6-bisphosphatase bin=GWC2_Deltaproteobacteria_42_51 species=ACD73 genus=ACD73 taxon_order=ACD73 taxon_class=ACD73 phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_635_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1768..2958)
DNA (1191bp) protein (397aa)
cofactor-independent phosphoglycerate mutase (EC:5.4.2.1); K15635 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] bin=bin1_lowGC species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
cofactor-independent phosphoglycerate mutase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_635_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3247..4635)
DNA (1389bp) protein (463aa)
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase Tax=Synechococcus sp. (strain CC9605) RepID=Q3AI84_SYNSC
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_635_5
Trabulsiella guamensis, Trabulsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4776..5840)
DNA (1065bp) protein (355aa)
Aminotransferase class I and II Tax=Enterobacter lignolyticus (strain SCF1) RepID=E3G9L7_ENTLS
class I and II aminotransferase
PLP-dependent aminotransferase {ECO:0000313|EMBL:KFC06884.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Trabulsiella.;" source="Trabulsiella guamensis ATCC 49490.;"
PLM3-1_170_b2_sep16_scaffold_635_6
unknown

Not on your lists

comp(6246..7070)
DNA (825bp) protein (275aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_635_7

Not on your lists

comp(7030..7665)
DNA (636bp) protein (212aa)
hypothetical protein, partial Tax=Alkalibacillus haloalkaliphilus RepID=UPI0003667509
Marine sediment metagenome DNA, contig: S01H1_C00749 {ECO:0000313|EMBL:GAF82033.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_635_8
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8087..8260)
DNA (174bp) protein (58aa)
Uncharacterized protein Tax=Thiothrix nivea DSM 5205 RepID=I3BYX8_9GAMM
hypothetical protein
Tax=CG_Desulfob_01
PLM3-1_170_b2_sep16_scaffold_635_9
unknown

Not on your lists

8401..8571
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_635_10
unknown

Not on your lists

comp(9195..9467)
DNA (273bp) protein (91aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_635_11
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9828..10100)
DNA (273bp) protein (91aa)
PilT domain-containing protein bin=GWD2_Deltaproteobacteria_55_8 species=Leptolyngbya sp. PCC 7375 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
twitching motility protein PilT
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_635_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10488..10730)
DNA (243bp) protein (81aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_635_13
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10929..13133)
DNA (2205bp) protein (735aa)
ATP-dependent DNA helicase bin=GWD2_Deltaproteobacteria_55_8 species=Bordetella avium genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ATP-dependent DNA helicase RecG
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_635_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13142..16381)
DNA (3240bp) protein (1080aa)
Carbamoyl-phosphate synthase large chain bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
carbamoyl-phosphate synthase large subunit
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_635_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16388..17569)
DNA (1182bp) protein (394aa)
Carbamoyl-phosphate synthase small chain bin=GWC2_Deltaproteobacteria_42_51 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
carbamoyl phosphate synthase small subunit
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_635_16
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17566..19497)
DNA (1932bp) protein (644aa)
pyrB; Aspartate carbamoyltransferase (EC:2.1.3.2)
aspartate carbamoyltransferase catalytic subunit bin=GWD2_Deltaproteobacteria_55_8 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_635_17
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19511..20068)
DNA (558bp) protein (186aa)
Bifunctional protein PyrR bin=GWD2_Deltaproteobacteria_55_8 species=Kineococcus radiotolerans genus=Kineococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
phosphoribosyltransferase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_635_18
Pseudomonas sp. FeS53a, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20226..20681)
DNA (456bp) protein (152aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FeS53a.;"
hypothetical protein Tax=Singularimonas variicoloris RepID=UPI000378D64B
phosphoesterase protein
PLM3-1_170_b2_sep16_scaffold_635_19
Bacillus gaemokensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20852..21358
DNA (507bp) protein (169aa)
3-hydroxyanthranilate 3,4-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; EC=1.13.11.6 {ECO:0000256|HAMAP-Rule:MF_00825};; 3-hydroxyanthranilate oxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; 3-hydroxyanthranilic acid dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus gaemokensis.;"
3-hydroxyanthranilate 3,4-dioxygenase Tax=Bacillus sp. 105MF RepID=UPI0003604017
3-hydroxyanthranilate 3,4-dioxygenase
PLM3-1_170_b2_sep16_scaffold_635_20
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21437..23017)
DNA (1581bp) protein (527aa)
phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_635_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23069..23227)
DNA (159bp) protein (53aa)
Iojap protein family bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iojap superfamily protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 21 items

View Taxonomy