ggKbase home page

PLM3-1_170_b2_sep16_scaffold_713

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_713_1
unknown

Not on your lists

355..840
DNA (486bp) protein (162aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_713_2
Bartonella bovis, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1293..1784
DNA (492bp) protein (164aa)
Chaperone protein DnaJ Tax=Bartonella bovis m02 RepID=N6UVQ6_9RHIZ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella bovis m02.;"
chaperone protein dnaJ
PLM3-1_170_b2_sep16_scaffold_713_3
Parastagonospora nodorum, Parastagonospora, Pleosporales, Pleosporomycetidae, Ascomycota, Fungi

Not on your lists

1963..4758
DNA (2796bp) protein (932aa)
Putative uncharacterized protein Tax=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) RepID=Q0UQS6_PHANO
Putative uncharacterized protein {ECO:0000313|EMBL:EAT86952.2}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora.;" source="Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173); (Glume blotch fungus) (Septoria nodorum).;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_713_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4887..5402
DNA (516bp) protein (172aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3-1_170_b2_sep16_scaffold_713_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5738..6499)
DNA (762bp) protein (254aa)
short-chain dehydrogenase Tax=Pusillimonas noertemannii RepID=UPI0003193895
short-chain dehydrogenase/reductase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_713_6
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6608..7468)
DNA (861bp) protein (287aa)
Chlorite dismutase bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
heme peroxidase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_713_7
unknown

Not on your lists

7520..7708
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_713_8
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7723..8361)
DNA (639bp) protein (213aa)
Putative uncharacterized protein Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SCG6_HAHCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC31658.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
PLM3-1_170_b2_sep16_scaffold_713_9
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8568..10001)
DNA (1434bp) protein (478aa)
UbiD family decarboxylases bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
UbiD family decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_713_10
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

comp(10548..12779)
DNA (2232bp) protein (744aa)
Peptidase S8 and S53, subtilisin, kexin, sedolisin bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
peptidase S8/S53 subtilisin kexin sedolisin
Tax=GWC2_Nitrospirae_42_7_curated
PLM3-1_170_b2_sep16_scaffold_713_11
unknown

Not on your lists

comp(12903..13091)
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_713_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13222..14547
DNA (1326bp) protein (442aa)
Putative Zn-dependent protease, involved in pqq synthesis (PpqF) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHK0_9BACT
Zn-dependent protease
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_713_13
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14775..16097
DNA (1323bp) protein (441aa)
Processing peptidase bin=GWC2_Nitrospirae_57_13 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_713_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16128..16508
DNA (381bp) protein (127aa)
Phosphate regulon transcriptional regulatory protein PhoB bin=GWD2_Deltaproteobacteria_55_8 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
two-component response regulator
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_713_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17029..18342
DNA (1314bp) protein (438aa)
tRNA nucleotidyltransferase/poly(A) polymerase family protein Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F9R3_ACIC5
tRNA nucleotidyltransferase/poly(A) polymerase family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_713_16
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18339..20741
DNA (2403bp) protein (801aa)
Xanthine dehydrogenase, molybdenum binding subunit (EC:1.17.1.4)
Putative aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain protein Tax=uncultured marine microorganism HF4000_ANIW93N21 RepID=B3T365_9ZZZZ
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_713_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20796..22064)
DNA (1269bp) protein (423aa)
Uncharacterized protein Tax=Rhizobium sp. CF080 RepID=J3CU87_9RHIZ
transmembrane protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying 17 items

View Taxonomy