ggKbase home page

PLM3-1_170_b2_sep16_scaffold_1222

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1222_1
BJP_08E140C01_10KDA_Chromatiales_49_130, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(182..571)
DNA (390bp) protein (130aa)
hypothetical protein Tax=Methylovulum miyakonense RepID=UPI0003768785
hypothetical protein
Tax=BJP_08E140C01_10KDA_Chromatiales_49_130
PLM3-1_170_b2_sep16_scaffold_1222_2
R_Bdellovibrionales_40_15, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

1041..1409
DNA (369bp) protein (123aa)
Uncharacterized protein Tax=Bdellovibrio bacteriovorus str. Tiberius RepID=K7ZCG9_BDEBC
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Bdellovibrionales_40_15_curated
PLM3-1_170_b2_sep16_scaffold_1222_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1744..2634
DNA (891bp) protein (297aa)
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ArsR family methyltransferase transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b2_sep16_scaffold_1222_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

2706..6329
DNA (3624bp) protein (1208aa)
metH; methionine synthase (EC:2.1.1.13)
Methionine synthase {ECO:0000313|EMBL:CBK41595.1}; EC=2.1.1.13 {ECO:0000313|EMBL:CBK41595.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Methionine synthase Tax=Candidatus Nitrospira defluvii RepID=D8PED6_9BACT
PLM3-1_170_b2_sep16_scaffold_1222_5
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7051..7608
DNA (558bp) protein (186aa)
id=1984325 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_1222_6
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7974..8534
DNA (561bp) protein (187aa)
id=1984325 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_1222_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9009..10199
DNA (1191bp) protein (397aa)
3'-5' exonuclease Tax=Chthoniobacter flavus Ellin428 RepID=B4D6R3_9BACT
3'-5' exonuclease
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1222_8
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(10381..10989)
DNA (609bp) protein (203aa)
Uncharacterized protein bin=GWA2_Elusimicrobia_69_24 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
mobile mystery protein B
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
PLM3-1_170_b2_sep16_scaffold_1222_9
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(10982..11377)
DNA (396bp) protein (132aa)
Transcriptional regulator, HTH family bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
mobile mystery protein A
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
PLM3-1_170_b2_sep16_scaffold_1222_10
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11733..12863)
DNA (1131bp) protein (377aa)
Putative amidohydrolase 2 protein Tax=Ralstonia solanacearum RepID=B5SFS4_RALSL
Uncharacterized protein {ECO:0000313|EMBL:EAP70792.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum UW551.;"
putative hydrolase
PLM3-1_170_b2_sep16_scaffold_1222_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12903..13895)
DNA (993bp) protein (331aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NMT1/THI5 like domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1222_12
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13921..14364)
DNA (444bp) protein (148aa)
DSBA oxidoreductase bin=GWD2_Deltaproteobacteria_55_8 species=SAR324 cluster bacterium SCGC AAA001-C10 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
DSBA oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_1222_13
Arhodomonas sp. Seminole, Arhodomonas, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14784..15170
DNA (387bp) protein (129aa)
Gamma carboxymuconolactone decarboxylase Tax=alpha proteobacterium BAL199 RepID=A8TRV6_9PROT
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:AIK66563.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Arhodomonas.;" source="Arhodomonas sp. Seminole.;"
4-carboxymuconolactone decarboxylase
Displaying 13 items

View Taxonomy