ggKbase home page

PLM3-1_170_b2_sep16_scaffold_1240

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1240_1
unknown

Not on your lists

comp(97..324)
DNA (228bp) protein (76aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

483..1388
DNA (906bp) protein (302aa)
ATP-dependent protease La (EC:3.4.21.53)
ATP-dependent protease La Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LPQ4_SYNAS
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1240_3
unknown

Not on your lists

2456..3085
DNA (630bp) protein (210aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_4
unknown

Not on your lists

3104..3313
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_5
unknown

Not on your lists

3359..3754
DNA (396bp) protein (132aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_6
unknown

Not on your lists

3763..4197
DNA (435bp) protein (145aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_7
unknown

Not on your lists

4224..4640
DNA (417bp) protein (139aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_8
unknown

Not on your lists

4612..4860
DNA (249bp) protein (83aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_9
unknown

Not on your lists

4911..5135
DNA (225bp) protein (75aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_10
unknown

Not on your lists

comp(5155..5748)
DNA (594bp) protein (198aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_11
GWB1_OP11_48_13, Amesbacteria, Microgenomates, Bacteria

Not on your lists

6445..8271
DNA (1827bp) protein (609aa)
Uncharacterized protein Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D2G3_PELTS
Uncharacterized protein {ECO:0000313|EMBL:KKU98329.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Amesbacteria) bacterium GW2011_GWB1_48_13.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1240_12
unknown

Not on your lists

8333..8707
DNA (375bp) protein (125aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9311..10603
DNA (1293bp) protein (431aa)
Phage integrase bin=GWB2_Deltaproteobacteria_65_81 species=unknown genus=Photobacterium taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
integrase family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1240_trna_1
unknown

Not on your lists

comp(10541..10614)
DNA (74bp)
transferRNA Pro
PLM3-1_170_b2_sep16_scaffold_1240_14
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10828..11064
DNA (237bp) protein (79aa)
id=2052364 bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_1240_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11391..12500
DNA (1110bp) protein (370aa)
Benzoyl-CoA oxygenase component B bin=GWD2_Deltaproteobacteria_55_8 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
benzoyl-CoA oxygenase subunit beta
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1240_16
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12664..12987
DNA (324bp) protein (108aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
4Fe-4S binding domain protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Dehalobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1240_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12991..13749
DNA (759bp) protein (253aa)
NADH dehydrogenase (Quinone) bin=GWD2_Deltaproteobacteria_55_8 species=Fervidobacterium nodosum genus=Fervidobacterium taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nuoF-2; NADH dehydrogenase I subunit F
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1240_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13730..14281
DNA (552bp) protein (184aa)
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.99.5)
NADH-quinone oxidoreductase, subunit F Tax=Candidatus Nitrospira defluvii RepID=D8PJ07_9BACT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1240_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14485..15315
DNA (831bp) protein (277aa)
Putative xylanase/chitin deacetylase Tax=Rhizobium sp. CF080 RepID=J3BJC1_9RHIZ
polysaccharide deacetylase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1240_20
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15376..16455
DNA (1080bp) protein (360aa)
Iron-binding periplasmic protein bin=GWD2_Deltaproteobacteria_55_8 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative ABC transporter substrate-binding protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_1240_21
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16477..17421
DNA (945bp) protein (315aa)
Putative NAD-binding domain 4 protein bin=GWD2_Deltaproteobacteria_55_8 species=Turneriella parva genus=Turneriella taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
wbmF; NAD-dependent nucleotide sugar epimerase/dehydratase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1240_22
unknown

Not on your lists

17551..17760
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1240_23
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17791..18534
DNA (744bp) protein (248aa)
Iron-binding periplasmic protein bin=GWD2_Deltaproteobacteria_55_8 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative ABC transporter substrate-binding protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_1240_24
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18702..19295)
DNA (594bp) protein (198aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1240_25
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19391..20251)
DNA (861bp) protein (287aa)
Putative xylanase/chitin deacetylase bin=GWD2_Deltaproteobacteria_55_8 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
polysaccharide deacetylase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_1240_26
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20345..21808
DNA (1464bp) protein (488aa)
Amidohydrolase family bin=GWD2_Deltaproteobacteria_55_8 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
amidohydrolase
Tax=GWD2_Deltaproteobacteria_55_8_curated
Displaying 27 items

View Taxonomy