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PLM3-1_170_b2_sep16_scaffold_1569

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1569_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1..822
DNA (822bp) protein (274aa)
Transcription termination factor NusA bin=GWD2_Deltaproteobacteria_55_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nusA; transcription termination factor NusA
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1569_2
Arthrobacter arilaitensis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1602..2384)
DNA (783bp) protein (261aa)
Hypothetical membrane protein Tax=Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 / Re117) RepID=E1W004_ARTAR
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:CBT77207.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 /; Re117).;"
PLM3-1_170_b2_sep16_scaffold_1569_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2537..4033
DNA (1497bp) protein (499aa)
Translation initiation factor IF-2 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
infB; translation initiation factor IF-2
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1569_4
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4073..4360
DNA (288bp) protein (96aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1569_5
unknown

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4445..4768
DNA (324bp) protein (108aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1569_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4895..5245
DNA (351bp) protein (117aa)
Ribosome-binding factor A bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rbfA; ribosome-binding factor A
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1569_7
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5310..6209
DNA (900bp) protein (300aa)
tRNA pseudouridine synthase B bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
truB; tRNA pseudouridine 55 synthase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_1569_8
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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6330..7412
DNA (1083bp) protein (361aa)
Type I restriction-modification system methyltransferase subunit bin=GWF2_Lentisphaerae_49_21 species=Thiorhodovibrio sp. 970 genus=Thiorhodovibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b2_sep16_scaffold_1569_9
BJP_IG2069_Syntrophobacterales_47_18, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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7512..9140
DNA (1629bp) protein (543aa)
Type I restriction-modification system specificity subunit Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XE54_MICPN
hsdS; type I restriction-modification system specificity subunit
Tax=BJP_IG2069_Syntrophobacterales_47_18
PLM3-1_170_b2_sep16_scaffold_1569_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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9137..9964
DNA (828bp) protein (276aa)
DNA topoisomerase, type IA, zn finger domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3C3_GEOUR
DNA topoisomerase type IA Zn finger domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1569_11
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

9961..11565
DNA (1605bp) protein (535aa)
Type I restriction-modification system, restriction subunit R (EC:3.1.21.3)
hypothetical protein Tax=euryarchaeote SCGC AAA261-G15 RepID=UPI00036195AC
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM3-1_170_b2_sep16_scaffold_1569_12
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

11519..13450
DNA (1932bp) protein (644aa)
hypothetical protein Tax=euryarchaeote SCGC AAA261-G15 RepID=UPI00036195AC
type I site-specific deoxyribonuclease, HsdR family
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM3-1_170_b2_sep16_scaffold_1569_13
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

13453..14163
DNA (711bp) protein (237aa)
hypothetical protein Tax=euryarchaeote SCGC AAA261-G15 RepID=UPI0003760B9F
metal-dependent hydrolase
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM3-1_170_b2_sep16_scaffold_1569_14
Caldithrix abyssi, Caldithrix, Bacteria

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14731..15375
DNA (645bp) protein (215aa)
Putative uncharacterized protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XUN1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EHO40530.1}; species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1569_15
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

15392..16429
DNA (1038bp) protein (346aa)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI0003775819
Appr-1-p processing protein {ECO:0000313|EMBL:KIJ73520.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
Appr-1-p processing domain protein
PLM3-1_170_b2_sep16_scaffold_1569_16
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

17099..17338
DNA (240bp) protein (80aa)
hypothetical protein Tax=Calothrix sp. PCC 7103 RepID=UPI00031451A7
Uncharacterized protein {ECO:0000313|EMBL:KIJ76861.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1569_17
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17366..17713
DNA (348bp) protein (116aa)
Uncharacterized protein Tax=Oscillatoria sp. PCC 6506 RepID=D8G6E5_9CYAN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3-1_170_b2_sep16_scaffold_1569_18
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17710..17943
DNA (234bp) protein (78aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1569_19
GWC2_OD1_53_7, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

17973..18176
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW34690.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_53_7.;"
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1569_20
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18248..19738
DNA (1491bp) protein (497aa)
DNA methyltransferase Tax=Rudaea cellulosilytica RepID=UPI000363D1BD
N-6 DNA methylase
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM3-1_170_b2_sep16_scaffold_1569_21
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20739..21446
DNA (708bp) protein (236aa)
cell division protein (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1569_22
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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21449..22615
DNA (1167bp) protein (389aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_1569_23
unknown

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comp(22922..23065)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 23 items

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