ggKbase home page

PLM3-1_170_b2_sep16_scaffold_1587

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1587_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..192)
DNA (192bp) protein (64aa)
Amidohydrolase family bin=GWA2_Ignavibacteriae_54_16_partial species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1587_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

541..1965
DNA (1425bp) protein (475aa)
UbiD family decarboxylases bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
UbiD family decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1587_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1992..3002
DNA (1011bp) protein (337aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1587_4
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3174..3425)
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1ZDC5_9BACT
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1587_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3901..4257
DNA (357bp) protein (119aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1587_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4495..4737)
DNA (243bp) protein (81aa)
Ribbon-helix-helix protein, copG family bin=GWD2_Deltaproteobacteria_55_8 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
CopG family transcriptional regulator
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1587_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4868..5317
DNA (450bp) protein (150aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1587_8
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

comp(6132..6980)
DNA (849bp) protein (283aa)
Putative uncharacterized protein Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SGA0_HAHCH
hypothetical protein
Tax=BJP_IG2158_Zixibacteria_48_33
PLM3-1_170_b2_sep16_scaffold_1587_9
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6980..7609)
DNA (630bp) protein (210aa)
Putative uncharacterized protein Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SKS9_PLABD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY58749.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
PLM3-1_170_b2_sep16_scaffold_1587_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7989..8240
DNA (252bp) protein (84aa)
Anti-ECFsigma factor, ChrR bin=GWD2_Deltaproteobacteria_55_8 species=Rhodospirillum photometricum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ChrR family transcriptional activator protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1587_11
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8444..9328
DNA (885bp) protein (295aa)
garR; tartronate semialdehyde reductase (EC:1.1.1.60)
Tartronate semialdehyde reductase bin=GWD2_Deltaproteobacteria_55_8 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_1587_12
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9339..9872
DNA (534bp) protein (178aa)
Probable RNA 2'-phosphotransferase Tax=Paenibacillus dendritiformis C454 RepID=H3SKD3_9BACL
phosphotransferase KptA/Tpt1
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_1587_13
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10174..10389
DNA (216bp) protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX03010.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3-1_170_b2_sep16_scaffold_1587_14
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10365..10823
DNA (459bp) protein (153aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX03010.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3-1_170_b2_sep16_scaffold_1587_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

10932..11126
DNA (195bp) protein (65aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b2_sep16_scaffold_1587_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

11123..11611
DNA (489bp) protein (163aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b2_sep16_scaffold_1587_17
unknown

Not on your lists

11819..12061
DNA (243bp) protein (81aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1587_18
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12045..13742
DNA (1698bp) protein (566aa)
argS; arginine--tRNA ligase (EC:6.1.1.19)
Arginine--tRNA ligase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1587_19
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13769..14518
DNA (750bp) protein (250aa)
A rare lipoprotein A bin=GWD2_Deltaproteobacteria_55_8 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
A rare lipoprotein A
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_1587_20
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14538..15554
DNA (1017bp) protein (339aa)
Anthranilate phosphoribosyltransferase bin=GWD2_Nitrospirae-related_57_8 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
anthranilate phosphoribosyltransferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_1587_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15719..16501
DNA (783bp) protein (261aa)
trpC; indole-3-glycerol-phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase Tax=Sutterella sp. CAG:351 RepID=R7IJG3_9BURK
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_1587_22
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16591..17217
DNA (627bp) protein (209aa)
N-(5'-phosphoribosyl)anthranilate isomerase bin=GWC2_Nitrospirae_57_13 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
N-(5'-phosphoribosyl)anthranilate isomerase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1587_23
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17174..18394
DNA (1221bp) protein (407aa)
Tryptophan synthase beta chain Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7C7_GEODF
tryptophan synthase subunit beta
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1587_24
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18476..19021
DNA (546bp) protein (182aa)
Tryptophan synthase alpha chain Tax=Geobacter sp. (strain M21) RepID=TRPA_GEOSM
tryptophan synthase subunit alpha
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 24 items

View Taxonomy