ggKbase home page

PLM3-1_170_b2_sep16_scaffold_1667

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1667_1
unknown

Not on your lists

228..332
DNA (105bp) protein (35aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1667_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

334..1065
DNA (732bp) protein (244aa)
Putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase {ECO:0000313|EMBL:KFC69369.1}; EC=2.1.1.- {ECO:0000313|EMBL:KFC69369.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
UbiE/COQ5 methyltransferase Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SN3_RHOFD
UbiE/COQ5 methyltransferase
PLM3-1_170_b2_sep16_scaffold_1667_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1342..2217
DNA (876bp) protein (292aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1667_4
unknown

Not on your lists

comp(2023..2403)
DNA (381bp) protein (127aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1667_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2503..3474
DNA (972bp) protein (324aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1667_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4230..5228)
DNA (999bp) protein (333aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1667_7
unknown

Not on your lists

5258..5350
DNA (93bp) protein (31aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1667_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5347..6396
DNA (1050bp) protein (350aa)
UPI0002776920 related cluster bin=GWD2_Deltaproteobacteria_55_8 species=Marinobacter sp. BSs20148 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
uncharacterized protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1667_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(6514..7485)
DNA (972bp) protein (324aa)
Dyp-type peroxidase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ85_9BACT
Dyp-type peroxidase
Dyp-type peroxidase {ECO:0000313|EMBL:CBE67450.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1667_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7765..8976)
DNA (1212bp) protein (404aa)
DEAD/DEAH box helicase domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XNT1_9BACT
DEAD/DEAH box helicase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1667_11
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9066..10286)
DNA (1221bp) protein (407aa)
Major facilitator transporter Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YVX5_9RHOO
Oxalate:formate exchange protein {ECO:0000313|EMBL:EXI67148.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
major facilitator superfamily MFS_1
PLM3-1_170_b2_sep16_scaffold_1667_12
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10360..10764)
DNA (405bp) protein (135aa)
Activator of Hsp90 ATPase 1 family protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5K6_GEOUR
activator of Hsp90 ATPase 1 family protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM3-1_170_b2_sep16_scaffold_1667_13
Nocardia asteroides, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10865..11380)
DNA (516bp) protein (172aa)
Uncharacterized protein Tax=Nocardia asteroides NBRC 15531 RepID=U5EAW6_NOCAS
Uncharacterized protein {ECO:0000313|EMBL:GAD83571.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia asteroides NBRC 15531.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1667_14
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11407..12459)
DNA (1053bp) protein (351aa)
Probable NAD-dependent alcohol dehydrogenase Tax=alpha proteobacterium BAL199 RepID=A8TMM7_9PROT
zinc-binding dehydrogenase family protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3-1_170_b2_sep16_scaffold_1667_15
unknown

Not on your lists

comp(12466..12567)
DNA (102bp) protein (34aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1667_16

Not on your lists

comp(12653..12763)
DNA (111bp) protein (37aa)
Rhodopirellula transposase family protein Tax=mine drainage metagenome RepID=T1CXG4_9ZZZZ
Transposase, Rhodopirellula-type {ECO:0000313|EMBL:EQD32633.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
Displaying 16 items

View Taxonomy