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PLM3-1_170_b2_sep16_scaffold_1748

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1748_1
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(92..1111)
DNA (1020bp) protein (340aa)
Integron integrase bin=GWA2_Elusimicrobia_69_24 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
integron integrase
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3-1_170_b2_sep16_scaffold_1748_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1256..2074
DNA (819bp) protein (273aa)
ResC/HemX-like cytochrome c biogenesis membrane protein bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ResC/HemX-like cytochrome c biogenesis membrane protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1748_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2078..3364
DNA (1287bp) protein (429aa)
Glutamyl-tRNA reductase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glutamyl-tRNA reductase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1748_4
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

3361..5121
DNA (1761bp) protein (587aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
Porphobilinogen deaminase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0Q4_THERP
hemD; porphobilinogen deaminase
PLM3-1_170_b2_sep16_scaffold_1748_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5123..6082
DNA (960bp) protein (320aa)
HemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
delta-aminolevulinic acid dehydratase Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B6B403
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1748_6
unknown

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6228..6467
DNA (240bp) protein (80aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1748_7

Not on your lists

comp(6476..7744)
DNA (1269bp) protein (423aa)
hypothetical protein Tax=Orenia marismortui RepID=UPI000369FF36
Putative Crp/Fnr transcription factor {ECO:0000313|EMBL:AIJ02276.1}; species="unclassified sequences; environmental samples.;" source="uncultured soil microorganism.;"
cyclic nucleotide-binding protein
PLM3-1_170_b2_sep16_scaffold_1748_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7927..8187)
DNA (261bp) protein (87aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1748_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8196..9206)
DNA (1011bp) protein (337aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1748_10
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9349..9792)
DNA (444bp) protein (148aa)
Cytochrome c, class II Tax=alpha proteobacterium BAL199 RepID=A8TMV7_9PROT
putative Cytochrome C
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1748_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9830..10156)
DNA (327bp) protein (109aa)
id=1956525 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1748_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10169..10378)
DNA (210bp) protein (70aa)
Bacterioferritin comigratory protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thalassospira taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
bacterioferritin comigratory protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1748_13
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10665..13097)
DNA (2433bp) protein (811aa)
Peptidase S45 penicillin amidase bin=GWD2_Deltaproteobacteria_55_8 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
peptidase S45, penicillin amidase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_1748_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13136..13741)
DNA (606bp) protein (202aa)
Glutathione S-transferase, N-terminal domain protein bin=GWD2_Deltaproteobacteria_55_8 species=Nostoc sp. PCC 7107 genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glutathione S-transferase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1748_15
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14000..14521
DNA (522bp) protein (174aa)
sulfopyruvate decarboxylase (EC:4.1.1.79)
Sulfopyruvate decarboxylase subunit alpha bin=GWD2_Deltaproteobacteria_55_8 species=Methanosaeta thermophila genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1748_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14534..15139
DNA (606bp) protein (202aa)
Putative phosphonopyruvate decarboxylase bin=GWA2_OP3_52_12 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
thiamine pyrophosphate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_1748_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15172..16188
DNA (1017bp) protein (339aa)
mer; luciferase-like monooxygenase family protein (EC:1.5.99.11)
5,10-methylenetetrahydromethanopterin reductase bin=GWA2_OP3_52_12 species=Halopiger xanaduensis genus=Halopiger taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3-1_170_b2_sep16_scaffold_1748_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16203..16604
DNA (402bp) protein (134aa)
Endoribonuclease L-PSP bin=GWA2_OP3_52_12 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
putative translation initiation inhibitor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3-1_170_b2_sep16_scaffold_1748_19
R_OD1_Giovannonibacteria_43_16, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

16839..17045
DNA (207bp) protein (69aa)
Tax=RIFCSPHIGHO2_02_OD1_Giovannonibacteria_43_16_curated
PLM3-1_170_b2_sep16_scaffold_1748_20
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17213..17353
DNA (141bp) protein (47aa)
DNA-directed RNA polymerase subunit omega bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
DNA-directed RNA polymerase subunit omega
Tax=GWD2_Deltaproteobacteria_55_8_curated
Displaying 20 items

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