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PLM3_127_b1_sep16_scaffold_2645

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b1_sep16_scaffold_2645_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..345)
DNA (345bp) protein (115aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] bin=bin3_NC10 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
sdhA; Succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_127_b1_sep16_scaffold_2645_2
CSP1_5_NC10, NC10, Bacteria

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comp(348..1154)
DNA (807bp) protein (269aa)
integral membrane protein bin=bin3_NC10 species=Streptomyces sp. BoleA5 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3_127_b1_sep16_scaffold_2645_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(1176..1760)
DNA (585bp) protein (195aa)
fumX; C-terminal fumarate hydratase, class I; K01678 fumarate hydratase subunit beta [EC:4.2.1.2] bin=bin7_NC10_sister species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
fumB; fumarate hydratase, class I (EC:4.2.1.2)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b1_sep16_scaffold_2645_4
R_Nitrospirae_66_17, Nitrospirae, Bacteria

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comp(1760..3991)
DNA (2232bp) protein (744aa)
isocitrate dehydrogenase (EC:1.1.1.42)
Isocitrate dehydrogenase NADP-dependent, monomeric type bin=GWC2_Deltaproteobacteria_56_8 species=Chlorobium chlorochromatii genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM3_127_b1_sep16_scaffold_2645_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(3988..4920)
DNA (933bp) protein (311aa)
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2); K01677 fumarate hydratase subunit alpha [EC:4.2.1.2] bin=bin7_NC10_sister species=Desulfurobacterium sp. TC5-1 genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2)
Tax=CSP1_6_Rokubacteria
PLM3_127_b1_sep16_scaffold_2645_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4936..5865)
DNA (930bp) protein (310aa)
Malate dehydrogenase bin=GWF2_Methylomirabilis_70_14 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
malate dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b1_sep16_scaffold_2645_7
unknown

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comp(6046..6294)
DNA (249bp) protein (83aa)

This feature has no annotations

PLM3_127_b1_sep16_scaffold_2645_8
R_NC10_66_22, NC10, Bacteria

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comp(6344..7333)
DNA (990bp) protein (330aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b1_sep16_scaffold_2645_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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7361..8668
DNA (1308bp) protein (436aa)
Deacylase Tax=Bacillus clausii (strain KSM-K16) RepID=Q5WDJ9_BACSK
deacylase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b1_sep16_scaffold_2645_10
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8700..9071)
DNA (372bp) protein (124aa)
SnoaL-like domain-containing protein Tax=Variovorax paradoxus B4 RepID=T1XJH0_VARPD
snoaL-like domain-containing protein
Tax=BJP_08E140C01_Burkholderiales_65_30
PLM3_127_b1_sep16_scaffold_2645_11
unknown

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9156..9290
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 11 items

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