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PLM4_32_coex_redo_sep16_scaffold_3228

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_3228_1
unknown

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comp(1..141)
DNA (141bp) protein (47aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_3228_2
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

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comp(156..2330)
DNA (2175bp) protein (725aa)
Peptidase S46 bin=GWF2_Melioribacter_38_21 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
peptidase S46
Tax=RBG_16_Zixibacteria_43_9_curated
PLM4_32_coex_redo_sep16_scaffold_3228_3
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

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comp(2462..2764)
DNA (303bp) protein (101aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A52_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
PLM4_32_coex_redo_sep16_scaffold_3228_4
GWA2_OD1_Kaiserbacteria_50_9_curated, Kaiserbacteria, Parcubacteria, Bacteria

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comp(2849..3358)
DNA (510bp) protein (170aa)
membrane protein Tax=Mesoflavibacter zeaxanthinifaciens RepID=UPI000255B440
hypothetical protein
Tax=GWA2_OD1_Kaiserbacteria_50_9_curated
PLM4_32_coex_redo_sep16_scaffold_3228_5
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(3365..4498)
DNA (1134bp) protein (378aa)
Alanine racemase domain protein bin=GWA2_Bacteroidetes_33_15 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_33_15 organism_group=Bacteroidetes
alanine racemase
Tax=GWD2_Bacteroidetes_33_33_curated
PLM4_32_coex_redo_sep16_scaffold_3228_6
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(4545..6047)
DNA (1503bp) protein (501aa)
hypothetical protein Tax=Dasania marina RepID=UPI000373EC6A
outer membrane protein and related peptidoglycan-associated
Tax=RBG_13_Ignavibacteria_36_8_curated
PLM4_32_coex_redo_sep16_scaffold_3228_7
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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6256..8052
DNA (1797bp) protein (599aa)
Elongation factor 4 bin=GWA2_Ignavibacteria_55_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
lepA; membrane GTPase LepA
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM4_32_coex_redo_sep16_scaffold_3228_8
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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8054..8947
DNA (894bp) protein (298aa)
Signal peptidase I bin=GWA2_Ignavibacteria_55_11 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
lepB; Signal peptidase I
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM4_32_coex_redo_sep16_scaffold_3228_9
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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8962..9204
DNA (243bp) protein (81aa)
signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
hypothetical protein Tax=Nocardiopsis gilva RepID=UPI0003790F34
PLM4_32_coex_redo_sep16_scaffold_3228_10
Chlorobaculum tepidum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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9195..9623
DNA (429bp) protein (143aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 /; TLS).;"
Signal peptidase I Tax=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) RepID=Q8KCH1_CHLTE
lepB; signal peptidase I
PLM4_32_coex_redo_sep16_scaffold_3228_11
GWA2_Ignavibacteriae_55_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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9653..10789
DNA (1137bp) protein (379aa)
Oxygen-independent coproporphyrinogen III oxidase bin=GWC2_Ignavibacteria_56_12 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
oxygen-independent coproporphyrinogen III oxidase
Tax=GWA2_Ignavibacteriae_55_25_curated
PLM4_32_coex_redo_sep16_scaffold_3228_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(10869..11231)
DNA (363bp) protein (121aa)
Rna binding protein bin=GWE2_RBX1_39_32 species=GWF2_TM6_27_16 genus=GWF2_TM6_27_16 taxon_order=GWF2_TM6_27_16 taxon_class=GWF2_TM6_27_16 phylum=TM6 tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
grp; RNA-binding protein
Tax=GWF2_RBX1_38_17_curated
PLM4_32_coex_redo_sep16_scaffold_3228_13
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

11402..11785
DNA (384bp) protein (128aa)
Putative uncharacterized protein bin=GWA2_Ignavibacteria_55_11 species=Chlorobium limicola genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
Displaying 13 items

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