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PLM3-1_200_b1_sep16_scaffold_9938

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b1_sep16_scaffold_9938_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..904)
DNA (903bp) protein (301aa)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b1_sep16_scaffold_9938_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(901..2124)
DNA (1224bp) protein (408aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
beta-ketoacyl synthase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b1_sep16_scaffold_9938_3
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2490..2732
DNA (243bp) protein (81aa)
DNA binding domain protein, excisionase family bin=GWD2_Deltaproteobacteria_55_8 species=Nitrobacter winogradskyi genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b1_sep16_scaffold_9938_4
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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2852..3307
DNA (456bp) protein (152aa)
Two-component system response regulator Tax=Cystobacter fuscus DSM 2262 RepID=S9PAV0_9DELT
Two-component system response regulator {ECO:0000313|EMBL:EPX60231.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
response regulator receiver
PLM3-1_200_b1_sep16_scaffold_9938_5
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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3339..5567
DNA (2229bp) protein (743aa)
histidine kinase (EC:2.7.13.3)
resE5; sensory box histidine kinase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_13_Nitrospirae_43_8_curated
PLM3-1_200_b1_sep16_scaffold_9938_6
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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5560..5913
DNA (354bp) protein (118aa)
Response regulator receiver protein Tax=Pedosphaera parvula Ellin514 RepID=B9XIN4_9BACT bin=16ft_combo_ws3_JS1 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Uncharacterized protein {ECO:0000313|EMBL:ETW98210.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
transcriptional response regulators
PLM3-1_200_b1_sep16_scaffold_9938_7
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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5962..6378
DNA (417bp) protein (139aa)
Response regulator receiver protein Tax=Pedosphaera parvula Ellin514 RepID=B9XIN4_9BACT bin=16ft_combo_ws3_JS1 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
winged helix family two component transcriptional regulator
Tax=RBG_13_Nitrospirae_43_8_curated
PLM3-1_200_b1_sep16_scaffold_9938_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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6416..6805
DNA (390bp) protein (130aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX02854.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
response regulator receiver protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
winged helix family two-component system transcriptional regulator
PLM3-1_200_b1_sep16_scaffold_9938_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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7142..7954
DNA (813bp) protein (271aa)
PAS sensor protein bin=GWD2_Deltaproteobacteria_55_8 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b1_sep16_scaffold_9938_10
unknown

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7951..8046
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying 10 items

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