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PLM3-1_200_b1_sep16_scaffold_3215

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b1_sep16_scaffold_3215_1
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(2..379)
DNA (378bp) protein (126aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase (MTA/SAH deaminase) (EC:3.5.4.28) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(396..536)
DNA (141bp) protein (47aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] bin=bin7_NC10_sister species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3-1_200_b1_sep16_scaffold_3215_3
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(653..1261)
DNA (609bp) protein (203aa)
diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] bin=bin3_NC10 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=bin3_NC10 organism_group=NC10
diaminopimelate epimerase (EC:5.1.1.7)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

1488..1970
DNA (483bp) protein (161aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] bin=bin1_lowGC species=Paenibacillus popilliae genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
fabG_4; 3-oxoacyl-[acyl-carrier-protein] reductase FabG (EC:1.1.1.100)
Tax=CSP1_2_Dadabacteria
PLM3-1_200_b1_sep16_scaffold_3215_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

1988..2227
DNA (240bp) protein (80aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] bin=bin1_lowGC species=Paenibacillus popilliae genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
Tax=CSP1_2_Dadabacteria
PLM3-1_200_b1_sep16_scaffold_3215_6
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(2315..3382)
DNA (1068bp) protein (356aa)
poly(R)-hydroxyalkanoic acid synthase subunit PhaC bin=bin1_lowGC species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin1_lowGC organism_group=Unknown_CP
poly(R)-hydroxyalkanoic acid synthase subunit PhaC
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_7
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(3512..3961)
DNA (450bp) protein (150aa)
id=3471291 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_8
unknown

Not on your lists

comp(3958..4200)
DNA (243bp) protein (81aa)

This feature has no annotations

PLM3-1_200_b1_sep16_scaffold_3215_9
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(4662..5474)
DNA (813bp) protein (271aa)
cytochrome c biogenesis protein bin=bin5_DeltaP species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
cytochrome C biogenesis protein ResC
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_10
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(5534..6604)
DNA (1071bp) protein (357aa)
Peptide chain release factor 1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ABC3_THEID
peptide chain release factor 1
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_11
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

6673..6882
DNA (210bp) protein (70aa)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_12
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

6884..7240
DNA (357bp) protein (119aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_13
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

7185..7880
DNA (696bp) protein (232aa)
5-formyltetrahydrofolate cyclo-ligase Tax=Clostridium beijerinckii RepID=UPI00030118F9
5-formyltetrahydrofolate cyclo-ligase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_14
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

7882..9438
DNA (1557bp) protein (519aa)
Ribonuclease Y bin=GWC2_Deltaproteobacteria_42_51 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
phosphodiesterase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_15
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9508..10197
DNA (690bp) protein (230aa)
Metallophosphoesterase bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
metallophosphoesterase
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
PLM3-1_200_b1_sep16_scaffold_3215_16
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(10101..12920)
DNA (2820bp) protein (940aa)
ppdK; pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase Tax=Candidatus Nitrospira defluvii RepID=D8PDR0_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_17
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(12937..15060)
DNA (2124bp) protein (708aa)
glyS; glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=SYGB_GEOUR
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_3215_18
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(15045..15932)
DNA (888bp) protein (296aa)
glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TGH4_CALNY
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
Displaying 18 items

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