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PLM3_127_b2_sep16_scaffold_2206

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2206_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(2..673)
DNA (672bp) protein (224aa)
Endonuclease/exonuclease/phosphatase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2206_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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703..2931
DNA (2229bp) protein (743aa)
isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_2206_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2981..3553
DNA (573bp) protein (191aa)
ATP-dependent Clp protease adaptor protein ClpS bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
clpS; ATP-dependent Clp protease adaptor protein clpS
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2206_4

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comp(3603..4070)
DNA (468bp) protein (156aa)
Putative uncharacterized protein Tax=uncultured bacterium 89 RepID=E3T6A2_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ADC35846.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium 89.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2206_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4109..5656)
DNA (1548bp) protein (516aa)
Altronate dehydratase (EC:4.2.1.7)
D-galactarate dehydratase/altronate hydrolase-like protein bin=GWC2_Methylomirabilis_70_16 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2206_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5761..6681)
DNA (921bp) protein (307aa)
Cobalt-zinc-cadmium resistance protein CzcD bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
czcD; Cation efflux system protein czcD
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2206_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6841..7482)
DNA (642bp) protein (214aa)
Molybdopterin binding protein bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium F25-01 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2206_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7567..8346
DNA (780bp) protein (260aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2206_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(8356..8691)
DNA (336bp) protein (112aa)
hypothetical protein; K08972 putative membrane protein bin=CNBR_ACIDO species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_2206_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9005..9370
DNA (366bp) protein (122aa)
Periplasmic thiol:disulfide interchange protein DsbA bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DSBA oxidoreductase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2206_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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9370..9678
DNA (309bp) protein (103aa)
nitrite reductase Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AD10
Rieske (2Fe-2S) domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_127_b2_sep16_scaffold_2206_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9675..10004
DNA (330bp) protein (110aa)
Allophanate hydrolase bin=GWA2_Methylomirabilis_73_35 species=Salinisphaera shabanensis genus=Salinisphaera taxon_order=Salinisphaerales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2206_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10079..10438
DNA (360bp) protein (120aa)
transcriptional regulator y4dJ bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2206_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10455..10772
DNA (318bp) protein (106aa)
Putative membrane protein bin=GWA2_Methylomirabilis_73_35 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
membrane protein of unknown function
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2206_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10769..11266
DNA (498bp) protein (166aa)
serine--pyruvate transaminase (EC:2.6.1.51)
Serine--pyruvate transaminase bin=GWA2_Methylomirabilis_73_35 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2206_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11275..12249
DNA (975bp) protein (325aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2206_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12266..13543
DNA (1278bp) protein (426aa)
UbiD decarboxylase family protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UbiD family decarboxylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 17 items

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