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PLM3_127_b2_sep16_scaffold_2433

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2433_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3..107
DNA (105bp) protein (35aa)
aspartate kinase (EC:2.7.2.4)
Aspartokinase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2433_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

308..1420
DNA (1113bp) protein (371aa)
Alcohol dehydrogenase zinc-binding domain protein bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alcohol dehydrogenase zinc-binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2433_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1581..2009
DNA (429bp) protein (143aa)
Helix-hairpin-helix motif (Fragment) bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2433_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2019..4331
DNA (2313bp) protein (771aa)
ComE-like competence protein bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ComE-like competence protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2433_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4400..5635
DNA (1236bp) protein (412aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
L,L-diaminopimelate aminotransferase bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2433_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(5781..6023)
DNA (243bp) protein (81aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_2433_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6070..6807)
DNA (738bp) protein (246aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2433_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6873..7874
DNA (1002bp) protein (334aa)
Aminodeoxychorismate lyase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
yceG; hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2433_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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7919..8587
DNA (669bp) protein (223aa)
1-acyl-sn-glycerol-3-phosphate acyltransferases bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2433_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8795..10171
DNA (1377bp) protein (459aa)
Argininosuccinate lyase bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
argininosuccinate lyase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2433_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10168..11241
DNA (1074bp) protein (358aa)
Putative Fibronectin, type III bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fibronectin, type III
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2433_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11428..12312
DNA (885bp) protein (295aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2433_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12323..13126
DNA (804bp) protein (268aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2433_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13153..13509
DNA (357bp) protein (119aa)
folQ; dihydroneopterin aldolase (EC:4.1.2.25) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
folQ; dihydroneopterin aldolase (EC:4.1.2.25)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2433_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13617..14168
DNA (552bp) protein (184aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2433_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14172..14684
DNA (513bp) protein (171aa)
RNA polymerase sigma factor bin=GWC2_Methylomirabilis_70_16 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ECF subfamily RNA polymerase sigma-24
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2433_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14681..15376
DNA (696bp) protein (232aa)
id=14627111 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2433_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15417..16817)
DNA (1401bp) protein (467aa)
Putative capsular polysaccharide synthesis protein (CpsA) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
capsular polysaccharide synthesis protein (cpsA)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2433_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16811..17932)
DNA (1122bp) protein (374aa)
putative glycosyl transferase, group 1 (EC:2.4.-.-)
Putative Glycosyl transferase, group 1 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2433_20
unknown

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comp(17932..18060)
DNA (129bp) protein (43aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2433_21
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(18050..19072)
DNA (1023bp) protein (341aa)
Glycosyl transferase group 1 Tax=Oscillochloris trichoides DG-6 RepID=E1IIE7_9CHLR
Glycosyl transferase group 1 {ECO:0000313|EMBL:EFO79022.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
group 1 glycosyl transferase
PLM3_127_b2_sep16_scaffold_2433_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(19069..20223)
DNA (1155bp) protein (385aa)
group 1 glycosyl transferase bin=bin7_NC10_sister species=Halorubrum saccharovorum genus=Halorubrum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 22 items

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