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PLM3_127_b2_sep16_scaffold_2496

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2496_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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3..260
DNA (258bp) protein (86aa)
groL; 60 kDa chaperonin (Protein Cpn60) (groEL protein) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
groL; chaperonin GroEL , truncated
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_2496_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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600..896
DNA (297bp) protein (99aa)
30S ribosomal protein S6 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsF; 30S ribosomal protein S6
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2496_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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896..1306
DNA (411bp) protein (137aa)
Single-stranded DNA-binding protein bin=GWA2_Methylomirabilis_73_35 species=Methylacidiphilum infernorum genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ssb; Single-stranded DNA-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2496_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1455..1682
DNA (228bp) protein (76aa)
rpsR; 30S ribosomal protein S18 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rpsR; 30S ribosomal protein S18
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2496_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1686..2132
DNA (447bp) protein (149aa)
50S ribosomal protein L9 bin=GWA2_Methylomirabilis_73_35 species=Desulfosporosinus sp. OT genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplI; 50S ribosomal protein L9
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2496_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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2158..3513
DNA (1356bp) protein (452aa)
Primary replicative DNA helicase bin=GWC2_Methylomirabilis_70_16 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
replicative DNA helicase
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_2496_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3709..5535
DNA (1827bp) protein (609aa)
Amino acid permease-associated region bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2496_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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5598..6515
DNA (918bp) protein (306aa)
DNA-3-methyladenine glycosylase II (EC:3.2.2.21)
DNA-3-methyladenine glycosylase II bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2496_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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6512..6838
DNA (327bp) protein (109aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2496_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6842..8296
DNA (1455bp) protein (485aa)
EmrB/QacA family drug resistance transporter bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
drug resistance transporter, EmrB/QacA subfamily
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2496_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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8299..8838
DNA (540bp) protein (180aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2496_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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8852..9247
DNA (396bp) protein (132aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein bin=GWA2_Methylomirabilis_73_35 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2496_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9251..11152
DNA (1902bp) protein (634aa)
ABC transporter ATP-binding protein with duplicated ATPase domains (EC:3.6.3.-)
ABC transporter related bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2496_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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11145..11444
DNA (300bp) protein (100aa)
HNH endonuclease family protein bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HNH endonuclease family protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2496_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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11652..12011
DNA (360bp) protein (120aa)
Competence protein ComEA helix-hairpin-helix repeat protein bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2496_16
unknown

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comp(12652..13581)
DNA (930bp) protein (310aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2496_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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13840..14871
DNA (1032bp) protein (344aa)
mreB; Rod shape-determining protein mreB bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rod shape-determining protein MreB
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2496_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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14912..15736
DNA (825bp) protein (275aa)
Cell shape-determining protein MreC bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 293 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mreC; rod shape-determining protein MreC
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2496_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15744..16229
DNA (486bp) protein (162aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rod shape-determining protein MreD
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2496_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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16226..18025
DNA (1800bp) protein (600aa)
Cell elongation specific D,D-transpeptidase bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrdA; penicillin-binding protein 2
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2496_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18013..19122
DNA (1110bp) protein (370aa)
Rod shape-determining protein RodA bin=GWF2_Methylomirabilis_70_14 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rod shape-determining protein RodA
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2496_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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19177..20700
DNA (1524bp) protein (508aa)
ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ribonuclease
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2496_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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20700..21119
DNA (420bp) protein (140aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2496_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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21142..21423
DNA (282bp) protein (94aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2496_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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21423..21770
DNA (348bp) protein (116aa)
Cu(2+)-binding/translocating P-type ATPase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heavy metal translocating P-type ATPase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 25 items

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