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PLM3_127_b2_sep16_scaffold_2636

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2636_1
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

comp(1..150)
-----------------
DNA (150bp)
protein (50aa)
hypothetical protein bin=CNBR_ACIDO species=Methylomicrobium album genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
PLM3_127_b2_sep16_scaffold_2636_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(271..2193)
-----------------
DNA (1923bp)
protein (641aa)
Alkyl sulfatase Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJ77_9BRAD
Beta-lactamase-like
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2636_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(2231..2392)
-----------------
DNA (162bp)
protein (54aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKT2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67731.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3_127_b2_sep16_scaffold_2636_4
Zea mays, Zea, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

comp(2395..3102)
-----------------
DNA (708bp)
protein (236aa)
Putative uncharacterized protein Tax=Zea mays RepID=B6SUZ1_MAIZE
Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM5G883759_P01}; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogoneae; Zea.;" source="Zea mays (Maize).;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2636_5
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3113..4795)
-----------------
DNA (1683bp)
protein (561aa)
Type II secretory pathway, component ExeA (Predicted ATPase) bin=GWC2_Nitrospirae-rel_56_14 species=Beggiatoa alba genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
exeA; general secretion pathway protein A
General secretion pathway protein A {ECO:0000313|EMBL:AAU90796.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
PLM3_127_b2_sep16_scaffold_2636_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5008..5496
-----------------
DNA (489bp)
protein (163aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3C8_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26296.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM3_127_b2_sep16_scaffold_2636_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5573..6145
-----------------
DNA (573bp)
protein (191aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2636_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6167..6592)
-----------------
DNA (426bp)
protein (142aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2636_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6625..8595)
-----------------
DNA (1971bp)
protein (657aa)
Peptidase S1 and S6, chymotrypsin/Hap bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase S1
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2636_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8859..9194
-----------------
DNA (336bp)
protein (112aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TRAP-T family transporter, large
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_2636_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9377..10777)
-----------------
DNA (1401bp)
protein (467aa)
Serine protease do-like (EC:3.4.21.-)
Putative Serine protease do-like Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMR6_9BACT
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2636_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10909..13461)
-----------------
DNA (2553bp)
protein (851aa)
putative peptidase M1, membrane alanine aminopeptidase (EC:3.4.11.2)
Putative Peptidase M1, membrane alanine aminopeptidase Tax=Candidatus Nitrospira defluvii RepID=D8PA72_9BACT
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2636_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13547..14389)
-----------------
DNA (843bp)
protein (281aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2636_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14544..15773
-----------------
DNA (1230bp)
protein (410aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2636_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15703..17427)
-----------------
DNA (1725bp)
protein (575aa)
Gamma-glutamyltransferase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gamma-glutamyltranspeptidase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2636_16
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

17502..20213
-----------------
DNA (2712bp)
protein (904aa)
NADPH:quinone reductase-like Zn-dependent oxidoreductase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJV3_CHLTF
NADPH:quinone reductase-like Zn-dependent oxidoreductase
NADPH:quinone reductase-like Zn-dependent oxidoreductase {ECO:0000313|EMBL:AEP13120.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM3_127_b2_sep16_scaffold_2636_17
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20235..20726
-----------------
DNA (492bp)
protein (164aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2K0W9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE76444.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2636_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20758..22479)
-----------------
DNA (1722bp)
protein (574aa)
Histidine kinase bin=GWC2_Methylomirabilis_70_24 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
multi-sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2636_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

22759..26424
-----------------
DNA (3666bp)
protein (1222aa)
2-oxoacid ferredoxin oxidoreductase (EC:1.2.7.8)
2-oxoacid ferredoxin oxidoreductase bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Displaying 19 items

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