ggKbase home page

PLM3_127_b2_sep16_scaffold_2712

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2712_1
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106..1401
DNA (1296bp) protein (432aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037A0A12
Luciferase family protein {ECO:0000313|EMBL:GAK45994.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
putative monooxygenase
PLM3_127_b2_sep16_scaffold_2712_2
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1583..3640
DNA (2058bp) protein (686aa)
Twin-arginine translocation pathway signal Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR4_MESSB
Uncharacterized protein {ECO:0000313|EMBL:ETX03028.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
twin-arginine translocation pathway signal
PLM3_127_b2_sep16_scaffold_2712_3
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

3709..4698
DNA (990bp) protein (330aa)
Binding-protein-dependent transport systems inner membrane component Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR1_MESSB
binding-protein-dependent transport systems inner membrane component
Tax=RBG_16_NC10_65_8_curated
PLM3_127_b2_sep16_scaffold_2712_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

4698..5867
DNA (1170bp) protein (390aa)
Binding-protein-dependent transport systems inner membrane component Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR0_MESSB
binding-protein-dependent transport systems inner membrane component
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_2712_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

6051..7067
DNA (1017bp) protein (339aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AQ9_MESSB
oligopeptide/dipeptide ABC transporter, ATPase subunit
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_2712_6
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7064..8110
DNA (1047bp) protein (349aa)
peptide ABC transporter ATP-binding protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626752
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETW96050.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
oligopeptide/dipeptide ABC transporter ATPase
PLM3_127_b2_sep16_scaffold_2712_7
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8642..9853
DNA (1212bp) protein (404aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SI13_THEM7
amino acid ABC transporter substrate-binding protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM3_127_b2_sep16_scaffold_2712_8
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

9880..11286
DNA (1407bp) protein (469aa)
Xanthine/uracil/vitamin C permease bin=GWF2_Lentisphaerae_57_35 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
xanthine/uracil/vitamin C permease
Tax=GWF2_Lentisphaerae_57_35_curated
PLM3_127_b2_sep16_scaffold_2712_9
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11537..11719
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW96496.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3_127_b2_sep16_scaffold_2712_10
unknown

Not on your lists

11796..11993
DNA (198bp) protein (66aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2712_11
unknown

Not on your lists

12013..12789
DNA (777bp) protein (259aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2712_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13534..14130
DNA (597bp) protein (199aa)
alpha/beta hydrolase fold protein bin=bin7_NC10_sister species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase fold protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_2712_13
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14138..15274
DNA (1137bp) protein (379aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003638704
vitamin-B12 independent methionine synthase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_127_b2_sep16_scaffold_2712_14
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15287..15718
DNA (432bp) protein (144aa)
Aerobic-type carbon monoxide dehydrogenase homolog, small subunit Tax=Burkholderiaceae RepID=Q0KD54_CUPNH
Isoquinoline 1-oxidoreductase alpha subunit protein {ECO:0000313|EMBL:KFE71467.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
h16_A0921; aerobic carbon monoxide dehydrogenase
PLM3_127_b2_sep16_scaffold_2712_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15715..17937
DNA (2223bp) protein (741aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding protein Tax=Cupriavidus basilensis OR16 RepID=H1S7G8_9BURK
aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_2712_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18235..19182
DNA (948bp) protein (316aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2712_17
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19328..20161)
DNA (834bp) protein (278aa)
ABC-type sugar transport system, permease component bin=GWA2_Methylomirabilis_73_35 species=Burkholderia sp. Ch1-1 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type sugar transport systems, permease component
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM3_127_b2_sep16_scaffold_2712_18

Not on your lists

comp(20158..21033)
DNA (876bp) protein (292aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL70358.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Binding-protein-dependent transport systems inner membrane component bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type sugar transport systems, permease component
PLM3_127_b2_sep16_scaffold_2712_19
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21056..22435)
DNA (1380bp) protein (460aa)
Sugar ABC superfamily ATP binding cassette transporter, substrate-binding bin=GWA2_Methylomirabilis_73_35 species=Mobiluncus mulieris genus=Mobiluncus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbohydrate ABC transporter substrate-binding protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM3_127_b2_sep16_scaffold_2712_20
uncultured delta proteobacterium HF4000_08N17, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22723..24135)
DNA (1413bp) protein (471aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; species="Bacteria; Proteobacteria; Deltaproteobacteria; environmental samples.;" source="uncultured delta proteobacterium HF4000_08N17.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase Tax=uncultured delta proteobacterium HF4000_08N17 RepID=E0XVJ3_9DELT
PLM3_127_b2_sep16_scaffold_2712_21
unknown

Not on your lists

24212..24391
DNA (180bp) protein (60aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2712_22
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24463..24696
DNA (234bp) protein (78aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Uncharacterized protein {ECO:0000313|EMBL:EAQ04427.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
histone H1
PLM3_127_b2_sep16_scaffold_2712_23
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(24689..25060)
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C6C6_SPHTD
hypothetical protein
Tax=RBG_16_Chloroflexi_57_9_curated
PLM3_127_b2_sep16_scaffold_2712_24
unknown

Not on your lists

comp(25083..25574)
DNA (492bp) protein (164aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2712_25
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26151..26999
DNA (849bp) protein (283aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF69_9BACT
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_58_17_curated
PLM3_127_b2_sep16_scaffold_2712_26
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

27109..28461
DNA (1353bp) protein (451aa)
modification methylase EcaI bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
DNA methyltransferase
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM3_127_b2_sep16_scaffold_2712_27
unknown

Not on your lists

comp(28389..28883)
DNA (495bp) protein (165aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2712_28
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29019..29312
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX05886.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
PLM3_127_b2_sep16_scaffold_2712_29
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29341..29946
DNA (606bp) protein (202aa)
Amidohydrolase 2 Tax=Oscillatoria sp. PCC 6506 RepID=D8FWJ9_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:ETX05886.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
TIM-barrel fold metal-dependent hydrolase
PLM3_127_b2_sep16_scaffold_2712_30
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29951..30862
DNA (912bp) protein (304aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
Uncharacterized protein {ECO:0000313|EMBL:ETX05897.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
3-hydroxyisobutyrate dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 34 in total

View Taxonomy