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PLM3_127_b2_sep16_scaffold_2903

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2903_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2..898)
DNA (897bp) protein (299aa)
Dipeptide transport system permease DppB bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
appB; ABC-type transporter, permease component: PepT family protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2903_2
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1046..1981
DNA (936bp) protein (312aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:EKE69508.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EKE69508.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
IlvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase Tax=Oceanibaculum indicum P24 RepID=K2J335_9PROT
PLM3_127_b2_sep16_scaffold_2903_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2064..3140)
DNA (1077bp) protein (359aa)
Candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system bin=GWD2_Deltaproteobacteria_55_8 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Spermidine/putrescine ABC transporter ATPase subunit
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_2903_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(3174..4901)
DNA (1728bp) protein (576aa)
Candidate ABC type Fe3+ transport system, permease component with duplicated domains bin=GWD2_Deltaproteobacteria_55_8 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iron ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_2903_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4906..5940)
DNA (1035bp) protein (345aa)
Candidate ABC type Fe3+ transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iron ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_2903_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(5953..7365)
DNA (1413bp) protein (471aa)
MmgE/PrpD family protein bin=GWD2_Deltaproteobacteria_55_8 species=Oceanicola granulosus genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MmgE/PrpD family protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_2903_7
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7421..8746)
DNA (1326bp) protein (442aa)
cytosine deaminase (EC:3.5.4.1)
Cytosine deaminase Tax=Microcoleus vaginatus FGP-2 RepID=F5UN94_9CYAN
Cytosine deaminase {ECO:0000313|EMBL:KJB92577.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
PLM3_127_b2_sep16_scaffold_2903_8
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8947..9822)
DNA (876bp) protein (292aa)
ATP-binding protein of ABC transporter Tax=alpha proteobacterium BAL199 RepID=A8TKY7_9PROT
ATP-binding protein of ABC transporter {ECO:0000313|EMBL:EDP66334.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
ABC transporter permease
PLM3_127_b2_sep16_scaffold_2903_9
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9840..10673)
DNA (834bp) protein (278aa)
nitrate ABC transporter ATPase Tax=Pannonibacter phragmitetus RepID=UPI00035EC300
ABC transporter permease/ATPase
ABC transporter nucleotide binding/ATPase protein {ECO:0000313|EMBL:ADZ69222.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
PLM3_127_b2_sep16_scaffold_2903_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10702..11754)
DNA (1053bp) protein (351aa)
ABC transporter substrate-binding protein Tax=alpha proteobacterium BAL199 RepID=A8TKY9_9PROT
NitT/TauT family transport system substrate-binding protein {ECO:0000313|EMBL:KFC64144.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2903_11
unknown

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12032..12205
DNA (174bp) protein (58aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2903_12
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12281..12544
DNA (264bp) protein (88aa)
Uncharacterized protein Tax=Bordetella parapertussis (strain Bpp5) RepID=K0M8N6_BORPB
Uncharacterized protein {ECO:0000313|EMBL:ETW94702.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2903_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12726..13712)
DNA (987bp) protein (329aa)
Lactate dehydrogenase (EC:1.1.1.26)
2-hydroxyacid dehydrogenase, putative bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_2903_14
unknown

Not on your lists

comp(13715..13849)
DNA (135bp) protein (45aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2903_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13851..14762)
DNA (912bp) protein (304aa)
Alpha/beta hydrolase fold bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium JLT2015 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase fold protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_2903_16
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14997..15758)
DNA (762bp) protein (254aa)
Class II aldolase/adducin-like protein Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W0S2_9BURK
Aldolase {ECO:0000313|EMBL:KIF79886.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2903_17
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15878..16945
DNA (1068bp) protein (356aa)
Blr0930 protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89VW5_BRADU
Uncharacterized protein {ECO:0000313|EMBL:KGJ65351.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2903_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16986..17879)
DNA (894bp) protein (298aa)
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 18 items

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