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PLM3_127_b2_sep16_scaffold_2986

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Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2986_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

3..644
DNA (642bp) protein (214aa)
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZD57_TERRK
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_127_b2_sep16_scaffold_2986_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

641..1714
DNA (1074bp) protein (358aa)
hypothetical protein bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_2986_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1711..2859
DNA (1149bp) protein (383aa)
hypothetical protein OPAG_01638 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Putative epoxide hydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2928..3512)
DNA (585bp) protein (195aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Rivularia sp. PCC 7116 genus=Rivularia taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2986_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3647..4576
DNA (930bp) protein (310aa)
Putative F420-dependent oxidoreductase, Rv1855c family protein bin=GWA2_Methylomirabilis_73_35 species=Mycobacterium phlei genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative F420-dependent oxidoreductase, Rv1855c family
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2986_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4666..6267)
DNA (1602bp) protein (534aa)
Bacterial FdrA family protein bin=GWF2_Lentisphaerae_57_35 species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
YahF/FdrA-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6264..7625)
DNA (1362bp) protein (454aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-54-dependent transcriptional response regulator
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2986_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7634..8200)
DNA (567bp) protein (189aa)
Sensor histidine kinase, HAMP and PAS domain-containing bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine kinase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2986_9
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8265..9821
DNA (1557bp) protein (519aa)
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM3_127_b2_sep16_scaffold_2986_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9794..10360)
DNA (567bp) protein (189aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2986_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10479..11414)
DNA (936bp) protein (312aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium HF0770_27F21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11529..12287)
DNA (759bp) protein (253aa)
Ribosomal RNA small subunit methyltransferase E bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA methyltransferase, RsmE family
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12295..13173)
DNA (879bp) protein (293aa)
Ribosomal protein L11 methyltransferase bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L11 methyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2986_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13173..14261)
DNA (1089bp) protein (363aa)
Chaperone protein DnaJ bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2986_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14263..14790)
DNA (528bp) protein (176aa)
Protein GrpE bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
grpE; DnaJ adenine nucleotide exchange factor GrpE
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14831..15850)
DNA (1020bp) protein (340aa)
Heat-inducible transcription repressor HrcA bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heat-inducible transcriptional repressor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16048..17286)
DNA (1239bp) protein (413aa)
oxygen-independent coproporphyrinogen III oxidase (yggW) (EC:1.3.99.22)
Coproporphyrinogen III oxidase bin=GWC2_Methylomirabilis_70_16 species=Corynebacterium genitalium genus=Corynebacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17229..17858)
DNA (630bp) protein (210aa)
signal peptidase I (EC:3.4.21.89)
Signal peptidase I bin=GWC2_Methylomirabilis_70_24 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2986_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17861..19651)
DNA (1791bp) protein (597aa)
Elongation factor 4 bin=GWC2_Methylomirabilis_70_24 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
GTP-binding protein LepA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19743..20834)
DNA (1092bp) protein (364aa)
Nucleotidyl transferase bin=GWC2_Methylomirabilis_70_16 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nucleotidyl transferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_21
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(20907..21071)
DNA (165bp) protein (55aa)
hypothetical protein; K09791 hypothetical protein bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_2986_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21068..22012)
DNA (945bp) protein (315aa)
UDP-glucuronate decarboxylase (EC:4.1.1.35)
NAD-dependent epimerase/dehydratase bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2986_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22019..23329)
DNA (1311bp) protein (437aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase bin=GWC2_Methylomirabilis_70_16 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2986_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23404..24192)
DNA (789bp) protein (263aa)
Putative CtaG protein bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24239..24571)
DNA (333bp) protein (111aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2986_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24571..26988)
DNA (2418bp) protein (806aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1)
Cytochrome c oxidase, subunit I bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2986_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26991..28049)
DNA (1059bp) protein (353aa)
cytochrome c oxidase subunit II (EC:1.9.3.1)
Cytochrome c oxidase subunit 2 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2986_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28072..29283)
DNA (1212bp) protein (404aa)
hydantoinase/carbamoylase amidase (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2986_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

29380..30576
DNA (1197bp) protein (399aa)
Acyl-CoA dehydrogenase domain protein bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2986_30
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

30593..31732
DNA (1140bp) protein (380aa)
putative acyl-CoA dehydrogenase (EC:1.3.99.-) bin=bin7_NC10_sister species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
putative acyl-CoA dehydrogenase (EC:1.3.99.-)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Displaying items 1-30 of 40 in total

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