ggKbase home page

PLM3_127_b2_sep16_scaffold_3296

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3296_1
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

224..961
DNA (738bp) protein (246aa)
ABC transporter related protein Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RFJ6_ARCPA
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADB58890.1}; species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 /; Av18).;"
PLM3_127_b2_sep16_scaffold_3296_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

933..1658
DNA (726bp) protein (242aa)
ABC transporter related protein Tax=Pelosinus fermentans RepID=I8RHV9_9FIRM bin=16ft_combo_ws3_JS1 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_3296_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1684..2934
DNA (1251bp) protein (417aa)
Receptor family ligand-binding protein Tax=delta proteobacterium NaphS2 RepID=D8F7F9_9DELT
extracellular ligand-binding receptor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_3296_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

2940..3827
DNA (888bp) protein (296aa)
branched-chain amino acid ABC superfamily ATP binding cassette transporter; K01997 branched-chain amino acid transport system permease protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_3296_5
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3848..4792
DNA (945bp) protein (315aa)
Amino acid or sugar ABC transport system, permease protein Tax=delta proteobacterium NaphS2 RepID=D8F7F7_9DELT
inner-membrane translocator
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM3_127_b2_sep16_scaffold_3296_6
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

4863..5183
DNA (321bp) protein (107aa)
hypothetical protein bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
PLM3_127_b2_sep16_scaffold_3296_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

5237..5506
DNA (270bp) protein (90aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM3_127_b2_sep16_scaffold_3296_8
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5609..6688)
DNA (1080bp) protein (360aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase bin=GWD2_Deltaproteobacteria_55_8 species=Thermosynechococcus elongatus genus=Thermosynechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3_127_b2_sep16_scaffold_3296_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6839..7897
DNA (1059bp) protein (353aa)
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase bin=GWA2_Methylomirabilis_73_35 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_127_b2_sep16_scaffold_3296_10
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(7883..8188)
DNA (306bp) protein (102aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM44045.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
PLM3_127_b2_sep16_scaffold_3296_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8250..9263)
DNA (1014bp) protein (338aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX01873.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase-like protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
luciferase-like protein
PLM3_127_b2_sep16_scaffold_3296_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9269..9700)
DNA (432bp) protein (144aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000361EC01
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_3296_13
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9715..10302)
DNA (588bp) protein (196aa)
hypothetical protein Tax=Streptomyces sp. AA0539 RepID=UPI00031B7D33
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_3296_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10305..11369)
DNA (1065bp) protein (355aa)
Uncharacterized protein Tax=Frankia alni (strain ACN14a) RepID=Q0RCN0_FRAAA
alkanal monooxygenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_3296_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11366..12466)
DNA (1101bp) protein (367aa)
Putative dioxigenase oxidoreductase Tax=Streptomyces zinciresistens K42 RepID=G2GEJ0_9ACTO
cupin
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_127_b2_sep16_scaffold_3296_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

12664..13524
DNA (861bp) protein (287aa)
phosphoribosylaminoimidazolesuccinocarboxamide synthase; K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] bin=bin8_Chloro species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3_127_b2_sep16_scaffold_3296_17
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13559..15751)
DNA (2193bp) protein (731aa)
Prolin-rich exported protein bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
fecR family protein
Tax=GWA2_Rhodocyclales_65_20_curated
PLM3_127_b2_sep16_scaffold_3296_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16154..16942
DNA (789bp) protein (263aa)
Transcription termination factor Rho bin=GWF2_Methylomirabilis_70_14 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription termination factor Rho
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_3296_19
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17175..18260
DNA (1086bp) protein (362aa)
Alkanal monooxygenase Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D6A8_BRAJP
Alkane 1-monooxygenase {ECO:0000313|EMBL:ETX00481.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
alkane 1-monooxygenase
PLM3_127_b2_sep16_scaffold_3296_20
unknown

Not on your lists

comp(18308..18421)
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 20 items

View Taxonomy