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PLM3_127_b2_sep16_scaffold_3399

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3399_1
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..542)
DNA (540bp) protein (180aa)
Multiple antibiotic resistance (MarC)-related protein Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DZE1_THIND
ychE_[C]; multiple antibiotic resistance (MarC)-related protein
UPF0056 inner membrane protein {ECO:0000256|RuleBase:RU362048}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
PLM3_127_b2_sep16_scaffold_3399_2
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(542..1354)
DNA (813bp) protein (271aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035F8FEA
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:ERK71619.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
short-chain dehydrogenase/reductase SDR
PLM3_127_b2_sep16_scaffold_3399_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1395..1580)
DNA (186bp) protein (62aa)
Ribonuclease VapC Tax=Rhodovulum sp. PH10 RepID=J6LAU1_9RHOB
PIN domain protein family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_3399_4
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1577..1756)
DNA (180bp) protein (60aa)
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_3399_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1946..2455
DNA (510bp) protein (170aa)
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3399_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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2452..3600
DNA (1149bp) protein (383aa)
4-hydroxybenzoyl-CoA reductase subunit alpha bin=GWC2_Methylomirabilis_70_24 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3399_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3549..4823
DNA (1275bp) protein (425aa)
4-hydroxybenzoyl-CoA reductase subunit alpha bin=GWC2_Methylomirabilis_70_16 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3399_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4823..5839
DNA (1017bp) protein (339aa)
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein bin=bin7_NC10_sister species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3399_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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5870..6415
DNA (546bp) protein (182aa)
Cupin 2 domain-containing protein bin=GWC2_Methylomirabilis_70_16 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3399_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6465..8156
DNA (1692bp) protein (564aa)
benzoyl-CoA-dihydrodiol lyase (EC:4.2.1.17); K15513 benzoyl-CoA-dihydrodiol lyase [EC:4.1.2.44] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
benzoyl-CoA-dihydrodiol lyase (EC:4.2.1.17)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3399_11
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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8156..9574
DNA (1419bp) protein (473aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AB-629-J17 RepID=UPI0003700BBD
boxB; benzoyl-CoA oxygenase component B
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_3399_12
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9608..10423
DNA (816bp) protein (272aa)
Uncharacterized protein Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TMG1_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK53949.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM3_127_b2_sep16_scaffold_3399_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10520..12064
DNA (1545bp) protein (515aa)
Putative benzoate-CoA ligase BzlA (Fragment) Tax=Clostridia bacterium enrichment culture clone BF RepID=D8WWP9_9FIRM
benzoate-CoA ligase family
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3399_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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12070..13356
DNA (1287bp) protein (429aa)
Phenylacetate-CoA ligase bin=GWC2_Methylomirabilis_70_24 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
paaK; phenylacetate-CoA ligase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3399_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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13428..13655
DNA (228bp) protein (76aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
Displaying 15 items

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