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PLM3_127_b2_sep16_scaffold_3515

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3515_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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217..978
DNA (762bp) protein (254aa)
Chromosome partitioning ATPase Soj bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Cobyrinic acid ac-diamide synthase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3515_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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968..1810
DNA (843bp) protein (281aa)
Chromosome segregation DNA-binding protein bin=GWA2_Methylomirabilis_73_35 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
chromosome segregation DNA-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3515_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2468..2911
DNA (444bp) protein (148aa)
tRNA-specific 2-thiouridylase MnmA bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3515_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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2961..3551
DNA (591bp) protein (197aa)
Sodium-transporting two-sector ATPase (EC:3.6.3.15)
ATP synthase subunit b bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3515_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3556..4104
DNA (549bp) protein (183aa)
ATP synthase delta chain (EC:3.6.3.14) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
F0F1 ATP synthase subunit delta (EC:3.6.3.14)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3515_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4184..5710
DNA (1527bp) protein (509aa)
atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase subunit alpha bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3515_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5726..6610
DNA (885bp) protein (295aa)
atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase gamma chain bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3515_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6607..8028
DNA (1422bp) protein (474aa)
atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase subunit beta bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3515_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8032..8442
DNA (411bp) protein (137aa)
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase epsilon chain bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3515_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8714..9223
DNA (510bp) protein (170aa)
Diguanylate cyclase with PAS/PAC sensor bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
diguanylate cyclase and metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3515_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9288..9536
DNA (249bp) protein (83aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3515_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9536..9811
DNA (276bp) protein (92aa)
hypothetical protein bin=bin7_NC10_sister species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3515_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9808..10404
DNA (597bp) protein (199aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-)
3-polyprenyl-4-hydroxybenzoate decarboxylase bin=GWA2_Methylomirabilis_73_35 species=Citrobacter freundii genus=Citrobacter taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3515_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10409..11323
DNA (915bp) protein (305aa)
Glycosyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 2 glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3515_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11333..12307
DNA (975bp) protein (325aa)
Oxidoreductase domain protein bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3515_16
unknown

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comp(12626..12889)
DNA (264bp) protein (88aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3515_17
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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comp(12917..13339)
DNA (423bp) protein (141aa)
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3_127_b2_sep16_scaffold_3515_18
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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comp(13336..14142)
DNA (807bp) protein (269aa)
hypothetical protein Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034799AD
Putative secreted protein
Tax=RBG_16_RIF_CHLX_72_14_curated
Displaying 18 items

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