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PLM3_127_b2_sep16_scaffold_3944

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3944_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..717
DNA (717bp) protein (239aa)
RNA polymerase sigma factor bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RpoD subfamily RNA polymerase sigma-70 subunit
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3944_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(997..1170)
DNA (174bp) protein (58aa)
DinB family protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_3944_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1496..1711)
DNA (216bp) protein (72aa)
biotin/lipoyl attachment domain-containing protein bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
biotin/lipoyl attachment domain-containing protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_3944_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1704..3050)
DNA (1347bp) protein (449aa)
Carbamoyl-phosphate synthase L chain ATP-binding protein bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Carbamoyl-phosphate synthase L chain ATP-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3944_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3093..4055)
DNA (963bp) protein (321aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3944_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4055..4810)
DNA (756bp) protein (252aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_3944_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4898..6055)
DNA (1158bp) protein (386aa)
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3944_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6290..6955)
DNA (666bp) protein (222aa)
cysE; serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3944_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6948..7328)
DNA (381bp) protein (127aa)
FeS cluster assembly scaffold protein NifU bin=GWC2_Methylomirabilis_70_24 species=Thermanaerovibrio acidaminovorans genus=Thermanaerovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
FeS assembly protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3944_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7325..8479)
DNA (1155bp) protein (385aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3944_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8521..8844
DNA (324bp) protein (108aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3944_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8864..9226
DNA (363bp) protein (121aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3944_13
unknown

Not on your lists

9226..9447
DNA (222bp) protein (74aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3944_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9452..9652)
DNA (201bp) protein (67aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FeS assembly protein IscX
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3944_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9669..9854)
DNA (186bp) protein (62aa)
Ferredoxin, 2Fe-2S type, ISC system bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ferredoxin
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3944_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9854..11686)
DNA (1833bp) protein (611aa)
Chaperone protein HscA (Hsc66) bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hscA; chaperone protein HscA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3944_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11664..12254)
DNA (591bp) protein (197aa)
Co-chaperone protein HscB (Hsc20) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hscB; co-chaperone protein HscB
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3944_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12332..12661)
DNA (330bp) protein (110aa)
Iron-sulfur cluster assembly protein IscA bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iron-sulfur cluster assembly accessory protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3944_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12689..13108)
DNA (420bp) protein (140aa)
iscU; iron-sulfur cluster assembly protein IscU; K04488 nitrogen fixation protein NifU and related proteins bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
iscU; iron-sulfur cluster assembly protein IscU
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3944_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13123..14349)
DNA (1227bp) protein (409aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3944_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14340..14798)
DNA (459bp) protein (153aa)
Putative Transcription factor IscR bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative transcription factor IscR
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3944_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14937..16148
DNA (1212bp) protein (404aa)
gdh; glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase bin=GWF2_Methylomirabilis_70_14 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3944_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16139..17143)
DNA (1005bp) protein (335aa)
galactose-1-phosphate uridyl transferase (Gal-1-P uridylyltransferase) (UDP-glucose--hexose-1-phosphate uridylyltransferase) (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3944_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(17155..18507)
DNA (1353bp) protein (451aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
peptidase S1 and S6 chymotrypsin/Hap
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3944_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18512..20674)
DNA (2163bp) protein (721aa)
chloride channel bin=bin7_NC10_sister species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
chloride channel
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3944_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20674..21546)
DNA (873bp) protein (291aa)
Conserved putative chloride channel bin=GWC2_Methylomirabilis_70_16 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3944_27
unknown

Not on your lists

22553..22798
DNA (246bp) protein (82aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3944_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22804..23694)
DNA (891bp) protein (297aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3944_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23697..24986)
DNA (1290bp) protein (430aa)
id=3735764 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3944_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24998..26011)
DNA (1014bp) protein (338aa)
MoxR-like ATPases (EC:3.6.3.-) bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
MoxR-like ATPases (EC:3.6.3.-)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying items 1-30 of 38 in total

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