ggKbase home page

PLM3_127_b2_sep16_scaffold_6693

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_6693_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3..236
DNA (234bp) protein (78aa)
ABC-type transporter, integral membrane subunit Tax=Caldithrix abyssi DSM 13497 RepID=H1XVK8_9BACT
ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_6693_2
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(315..1496)
DNA (1182bp) protein (394aa)
FAD dependent oxidoreductase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C862_SPHTD
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ACZ40005.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3_127_b2_sep16_scaffold_6693_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1635..3176
DNA (1542bp) protein (514aa)
Oligopeptide ABC transpoter oligopeptide-binding protein bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter substrate-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_6693_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

3219..4145
DNA (927bp) protein (309aa)
Binding-protein-dependent transport systems inner membrane component bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_6693_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4111..5010
DNA (900bp) protein (300aa)
Oligopeptide ABC transporter permease protein bin=GWF2_Methylomirabilis_70_14 species=Ketogulonicigenium vulgare genus=Ketogulonicigenium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gsiD; Oligopeptide ABC transporter permease protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_6693_6
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

5375..6565
DNA (1191bp) protein (397aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CV59_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE85585.1}; species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
PLM3_127_b2_sep16_scaffold_6693_7
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6614..6790
DNA (177bp) protein (59aa)
Uncharacterized protein Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CW56_PSEUX
Uncharacterized protein {ECO:0000313|EMBL:GAN76491.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_6693_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6882..7166)
DNA (285bp) protein (95aa)
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_6693_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

7388..7753
DNA (366bp) protein (122aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1Y4A9_9BACT
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_6693_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7989..8240)
DNA (252bp) protein (84aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_6693_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8285..8689)
DNA (405bp) protein (135aa)
B12-binding protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
(R)-methylmalonyl-CoA mutase, adenosylcobamide-binding subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_6693_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8686..9111)
DNA (426bp) protein (142aa)
Histidine triad (HIT) protein bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_6693_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9449..10516)
DNA (1068bp) protein (356aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid transaminase bin=GWF2_Methylomirabilis_70_14 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_6693_14
unknown

Not on your lists

comp(10513..10821)
DNA (309bp) protein (103aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_6693_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10806..11090)
DNA (285bp) protein (95aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_6693_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11125..12774)
DNA (1650bp) protein (550aa)
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_6693_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12878..14026)
DNA (1149bp) protein (383aa)
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_6693_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14045..15028)
DNA (984bp) protein (328aa)
Electron transfer flavoprotein alpha/beta-subunit bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
electron transfer flavoprotein subunit alpha/beta
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_6693_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15044..15823)
DNA (780bp) protein (260aa)
Electron transfer flavoprotein, beta subunit bin=GWC2_Methylomirabilis_70_16 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
electron transfer flavoprotein, beta subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_6693_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15820..16398)
DNA (579bp) protein (193aa)
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator bin=bin7_NC10_sister species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
transcriptional regulator, GntR family
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_6693_21
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(16916..17113)
DNA (198bp) protein (66aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
trpD; anthranilate phosphoribosyltransferase
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Displaying 21 items

View Taxonomy