ggKbase home page

PLM3_127_b2_sep16_scaffold_6915

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_6915_1
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

3..122
DNA (120bp) protein (40aa)
Tax=RBG_16_Planctomycetes_59_8_curated
PLM3_127_b2_sep16_scaffold_6915_2
unknown

Not on your lists

393..548
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_6915_3
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(487..747)
DNA (261bp) protein (87aa)
hypothetical protein Tax=Methylosinus sp. LW4 RepID=UPI000378B95E
hypothetical protein
Tax=RBG_13_Planctomycetes_62_9_curated
PLM3_127_b2_sep16_scaffold_6915_4
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(791..1084)
DNA (294bp) protein (98aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI0003672B0F
Uncharacterized protein {ECO:0000313|EMBL:ETX06319.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_6915_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1579..2391
DNA (813bp) protein (271aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW95588.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase-like protein bin=bin1_lowGC species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin1_lowGC organism_group=Unknown_CP
luciferase-like protein
PLM3_127_b2_sep16_scaffold_6915_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2592..3110
DNA (519bp) protein (173aa)
amidohydrolase 2 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase 2
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_127_b2_sep16_scaffold_6915_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3107..4654
DNA (1548bp) protein (516aa)
Glutathione ABC transport system substrate binding protein GsiB bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dipeptide ABC transporter substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_127_b2_sep16_scaffold_6915_8
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

4773..5099
DNA (327bp) protein (109aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00036F13EA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ67233.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416; / KR-200).;"
PLM3_127_b2_sep16_scaffold_6915_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

5122..6669
DNA (1548bp) protein (516aa)
Oligopeptide ABC transporter substrate-binding protein bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
extracellular solute-binding protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_6915_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6810..7727
DNA (918bp) protein (306aa)
Dipeptide transport system permease DppB bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_6915_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7728..8585
DNA (858bp) protein (286aa)
Binding-protein-dependent transport systems inner membrane component bin=GWF2_Methylomirabilis_70_14 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gsiD; Oligopeptide ABC transporter permease protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_6915_12
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9049..9339)
DNA (291bp) protein (97aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2B01D
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM3_127_b2_sep16_scaffold_6915_13

Not on your lists

comp(9394..10842)
DNA (1449bp) protein (483aa)
Bacterial extracellular solute-binding proteins, family 5 Middle {ECO:0000313|EMBL:AIA17927.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Glutathione ABC transport system substrate binding protein GsiB bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 5 extracellular solute-binding protein
PLM3_127_b2_sep16_scaffold_6915_14
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10977..12014
DNA (1038bp) protein (346aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037C9B61
Uncharacterized protein {ECO:0000313|EMBL:ETX05983.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
luciferase-like monooxygenase
PLM3_127_b2_sep16_scaffold_6915_15
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12059..13177
DNA (1119bp) protein (373aa)
Amidohydrolase family Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4W007_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:ETW94082.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
TIM-barrel fold metal-dependent hydrolase
PLM3_127_b2_sep16_scaffold_6915_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13213..13893
DNA (681bp) protein (227aa)
carboxymethylenebutenolidase (EC:3.1.1.45)
Putative carboxymethylenebutenolidase (Dienelactone hydrolase)(DLH) Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJF9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ETW94911.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3_127_b2_sep16_scaffold_6915_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15093..16268
DNA (1176bp) protein (392aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F4V3_VERMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92728.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying 17 items

View Taxonomy