ggKbase home page

PLM3_127_b2_sep16_scaffold_4912

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4912_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3..167
-----------------
DNA (165bp)
protein (55aa)
Two component transcriptional regulator, winged helix family Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HF04_ANADF
two component transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_4912_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

333..1703
-----------------
DNA (1371bp)
protein (457aa)
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] bin=bin7_NC10_sister species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4912_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1676..2467)
-----------------
DNA (792bp)
protein (264aa)
Putative Haloacid dehalogenase-like hydrolase domain-containing protein 3 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Haloacid dehalogenase-like hydrolase domain-containing protein 3
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_4912_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2512..4482
-----------------
DNA (1971bp)
protein (657aa)
Cytochrome c, class I bin=GWA2_Methylomirabilis_73_35 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c, class I
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4912_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4489..4857
-----------------
DNA (369bp)
protein (123aa)
id=14626966 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
electron transporter SenC
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_4912_6
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4928..5524)
-----------------
DNA (597bp)
protein (199aa)
Uncharacterized protein Tax=Ralstonia RepID=B2UA07_RALPJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD27701.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12J).;"
PLM3_127_b2_sep16_scaffold_4912_7
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5682..6281
-----------------
DNA (600bp)
protein (200aa)
RNA polymerase sigma factor SigK (Sigma-K) Tax=Candidatus Nitrospira defluvii RepID=D8P7L7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETX04217.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
sigK; RNA polymerase sigma factor SigK (Sigma-K)
PLM3_127_b2_sep16_scaffold_4912_8
unknown

Not on your lists

6583..7053
-----------------
DNA (471bp)
protein (157aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4912_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7050..7448
-----------------
DNA (399bp)
protein (133aa)
hypothetical protein bin=bin3_NC10 species=Bordetella avium genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4912_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7586..9016)
-----------------
DNA (1431bp)
protein (477aa)
Sensor protein yycG (EC:2.7.13.3) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Sensor protein yycG (EC:2.7.13.3)
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_4912_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(9028..11652)
-----------------
DNA (2625bp)
protein (875aa)
GAF sensor hybrid histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GAF sensor hybrid histidine kinase
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_4912_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11763..12458)
-----------------
DNA (696bp)
protein (232aa)
Response regulator in two-component regulatory system with PhoR (Or CreC), regulation of Pi uptake (OmpR family) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phoB; response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family)
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_4912_13
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(12589..12915)
-----------------
DNA (327bp)
protein (109aa)
GCN5-related N-acetyltransferase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNJ6_OPITP
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACB74430.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM3_127_b2_sep16_scaffold_4912_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12962..13483)
-----------------
DNA (522bp)
protein (174aa)
Response regulator receiver bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Response regulator receiver
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4912_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13894..15306)
-----------------
DNA (1413bp)
protein (471aa)
Glutamine synthetase bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamine synthetase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4912_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15417..16961)
-----------------
DNA (1545bp)
protein (515aa)
Ammonium transport protein (Amt family) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amtB; ammonium transport protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4912_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16997..17335)
-----------------
DNA (339bp)
protein (113aa)
Nitrogen regulatory protein P-II 1 bin=GWA2_Methylomirabilis_73_35 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrogen regulatory protein P-II
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4912_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17514..18905)
-----------------
DNA (1392bp)
protein (464aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, transcriptional regulator, Fis family
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4912_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18902..20089)
-----------------
DNA (1188bp)
protein (396aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
Signal transduction histidine kinase, nitrogen specific, NtrB bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 19 items

View Taxonomy