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PLM3_127_b2_sep16_scaffold_7716

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_7716_1
unknown

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3..146
DNA (144bp) protein (48aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_7716_2
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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136..435
DNA (300bp) protein (100aa)
Cytochrome c, mono-and diheme variants family Tax=Singulisphaera acidiphila RepID=L0DBX0_SINAD
cytochrome c, mono- and diheme variants family
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_127_b2_sep16_scaffold_7716_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(442..2766)
DNA (2325bp) protein (775aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2883..3770
DNA (888bp) protein (296aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NHL repeat family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3778..4437
DNA (660bp) protein (220aa)
Phosphonate degradation operons associated HDIG domain protein Tax=Variovorax paradoxus (strain S110) RepID=C5CPJ5_VARPS
phosphonate degradation operon associated HDIG domain-containing protein
Phosphonate degradation operons associated HDIG domain protein {ECO:0000313|EMBL:ACS17716.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
PLM3_127_b2_sep16_scaffold_7716_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4459..5103)
DNA (645bp) protein (215aa)
Soluble lytic murein transglycosylase-like protein bin=GWA2_Methylomirabilis_73_35 species=Selenomonas ruminantium genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
slt; soluble lytic transglycosylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5246..5488)
DNA (243bp) protein (81aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_8
RBG_16_NC10_65_8_curated, NC10, Bacteria

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5564..6052
DNA (489bp) protein (163aa)
Putative O-linked N-acetylglucosamine transferase, SPINDLY family Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y7E8_THIV6
Flp pilus assembly protein TadD
Tax=RBG_16_NC10_65_8_curated
PLM3_127_b2_sep16_scaffold_7716_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6059..7639
DNA (1581bp) protein (527aa)
Family 3 adenylate cyclase bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
family 3 adenylate cyclase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7715..8740
DNA (1026bp) protein (342aa)
hypothetical protein bin=bin7_NC10_sister species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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8752..9774
DNA (1023bp) protein (341aa)
pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family (EC:3.5.99.7)
D-cysteine desulfhydrase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_7716_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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9780..10613
DNA (834bp) protein (278aa)
Alpha/beta hydrolase fold protein bin=GWA2_Methylomirabilis_73_35 species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain alpha-keto acid dehydrogenase subunit E2
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_7716_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10630..10947
DNA (318bp) protein (106aa)
Rhodanese domain protein bin=GWA2_Methylomirabilis_73_35 species=Kingella denitrificans genus=Kingella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rhodanese
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10948..11727
DNA (780bp) protein (260aa)
enoyl-CoA hydratase (EC:4.2.1.17) bin=bin7_NC10_sister species=Saccharopolyspora spinosa genus=Saccharopolyspora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
enoyl-CoA hydratase (EC:4.2.1.17)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_7716_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11875..12399
DNA (525bp) protein (175aa)
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_7716_16
unknown

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12475..12816
DNA (342bp) protein (114aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_7716_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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12882..13733
DNA (852bp) protein (284aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
3-hydroxybutyryl-CoA dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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13878..14606
DNA (729bp) protein (243aa)
Transcriptional regulator, GntR family bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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14644..16740
DNA (2097bp) protein (699aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
5-oxoprolinase (ATP-hydrolyzing) bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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17216..17434
DNA (219bp) protein (73aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_7716_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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17467..19641
DNA (2175bp) protein (725aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
5-oxoprolinase (EC:3.5.2.9)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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19649..20365
DNA (717bp) protein (239aa)
Acyl-CoA dehydrogenase domain protein bin=GWC2_Methylomirabilis_70_16 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl-CoA dehydrogenase domain protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_7716_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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20391..21560
DNA (1170bp) protein (390aa)
Propanoyl-CoA C-acyltransferase bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acetyl-CoA acetyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_7716_24
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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21617..22828
DNA (1212bp) protein (404aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] bin=bin8_Chloro species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Tax=CSP1_4_Chloroflexi
PLM3_127_b2_sep16_scaffold_7716_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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22842..23270
DNA (429bp) protein (143aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative nucleic-acid-binding protein containing a Zn-ribbon
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_7716_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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23267..23650
DNA (384bp) protein (128aa)
Cobalamin B12-binding domain protein bin=GWA2_Methylomirabilis_73_35 species=Thermotoga lettingae genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin B12-binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_7716_27
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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23647..25221
DNA (1575bp) protein (525aa)
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] bin=bin7_NC10_sister species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_7716_28
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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25218..25472
DNA (255bp) protein (85aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_7716_29
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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25472..25660
DNA (189bp) protein (63aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_127_b2_sep16_scaffold_7716_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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26174..27100
DNA (927bp) protein (309aa)
SMP-30/Gluconolaconase/LRE domain protein Tax=beta proteobacterium CB RepID=M1SU42_9PROT
SMP-30/Gluconolaconase/LRE domain protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Displaying items 1-30 of 32 in total

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