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PLM3_127_b2_sep16_scaffold_1055

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1055_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3..569
DNA (567bp) protein (189aa)
Peptidase U62 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
microcin-processing peptidase 1
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1055_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

584..1369
DNA (786bp) protein (262aa)
Deoxyribonuclease bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TatD-related deoxyribonuclease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1456..2079
DNA (624bp) protein (208aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2218..3015)
DNA (798bp) protein (266aa)
Undecaprenyl-diphosphatase bin=GWC2_Methylomirabilis_70_16 species=Alishewanella agri genus=Alishewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative undecaprenol kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3012..3863)
DNA (852bp) protein (284aa)
Short-chain dehydrogenase/reductase SDR bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
short-chain dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3984..4730
DNA (747bp) protein (249aa)
Molybdopterin binding domain protein bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin binding domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4736..5131)
DNA (396bp) protein (132aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PC53_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5223..6158
DNA (936bp) protein (312aa)
polyamine-transporting ATPase (EC:3.6.3.31); K09687 antibiotic transport system ATP-binding protein bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
polyamine-transporting ATPase (EC:3.6.3.31)
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1055_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6142..6936
DNA (795bp) protein (265aa)
ABC-2 type transporter bin=GWC2_Methylomirabilis_70_16 species=Methanosaeta harundinacea genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1055_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7061..7357
DNA (297bp) protein (99aa)
Histidine kinase bin=GWF2_Methylomirabilis_70_14 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PAS/PAC sensor hybrid histidine kinase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1055_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7363..8076
DNA (714bp) protein (238aa)
multi-sensor hybrid histidine kinase, partial bin=GWC2_Methylomirabilis_70_16 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PAS domain-containing protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_1055_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8299..9225)
DNA (927bp) protein (309aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, alpha subunit bin=GWC2_Methylomirabilis_70_16 species=Thermoanaerobacter siderophilus genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9255..10169)
DNA (915bp) protein (305aa)
transketolase (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1] bin=bin7_NC10_sister species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
transketolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10169..11728)
DNA (1560bp) protein (520aa)
id=14627849 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1055_15
unknown

Not on your lists

comp(11734..11838)
DNA (105bp) protein (35aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1055_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11887..12141)
DNA (255bp) protein (85aa)
UPF0176 protein bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12194..13756)
DNA (1563bp) protein (521aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1055_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13753..14970)
DNA (1218bp) protein (406aa)
Molybdenum cofactor synthesis domain protein bin=GWC2_Methylomirabilis_70_16 species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
molybdenum cofactor synthesis domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1055_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14983..15462
DNA (480bp) protein (160aa)
RDD domain containing protein bin=GWA2_Methylomirabilis_73_35 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
membrane protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1055_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15459..16070
DNA (612bp) protein (204aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Blastococcus saxobsidens genus=Blastococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1055_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16305..16640
DNA (336bp) protein (112aa)
RNP-1 like RNA-binding protein bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNP-1 like RNA-binding protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1055_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16748..18967)
DNA (2220bp) protein (740aa)
DNA polymerase bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA polymerase II
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(19218..19709)
DNA (492bp) protein (164aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1055_24
unknown

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comp(19710..19979)
DNA (270bp) protein (90aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1055_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20022..20879
DNA (858bp) protein (286aa)
Dienelactone hydrolase bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase S9 family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1055_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20991..21896
DNA (906bp) protein (302aa)
PDZ/DHR/GLGF domain-containing protein bin=bin7_NC10_sister species=Methylobacterium populi genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
serine protease
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1055_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21922..22521
DNA (600bp) protein (200aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 27 items

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