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PLM3_127_b2_sep16_scaffold_1139

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1139_1
unknown

Not on your lists

comp(1..87)
-----------------
DNA (87bp)
protein (29aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1139_2
R_NC10_66_22, NC10, Bacteria

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comp(131..607)
-----------------
DNA (477bp)
protein (159aa)
Cytochrome c, class II Tax=alpha proteobacterium BAL199 RepID=A8TMV7_9PROT
cytochrome C
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1139_3
R_NC10_66_22, NC10, Bacteria

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comp(630..1544)
-----------------
DNA (915bp)
protein (305aa)
cytochrome c Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002893947
diheme cytochrome C-type
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1139_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1573..2031)
-----------------
DNA (459bp)
protein (153aa)
rimI; ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] bin=bin7_NC10_sister species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rimI; putative ribosomal-protein-alanine acetyltransferase RimI (EC:2.3.1.128)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1139_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2036..2728)
-----------------
DNA (693bp)
protein (231aa)
peptidase M22, glycoprotease bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1139_6
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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2788..3471
-----------------
DNA (684bp)
protein (228aa)
Orotate phosphoribosyltransferase (OPRT) (OPRTase) (EC:2.4.2.10) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Orotate phosphoribosyltransferase (OPRT) (OPRTase) (EC:2.4.2.10)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_1139_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3485..5302)
-----------------
DNA (1818bp)
protein (606aa)
cobalamin B12-binding/Radical SAM family protein bin=bin7_NC10_sister species=Leptospirillum ferriphilum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
cobalamin B12-binding/Radical SAM family
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1139_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5336..5845)
-----------------
DNA (510bp)
protein (170aa)
Transcriptional repressor NrdR bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nrdR; NrdR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1139_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5868..7109)
-----------------
DNA (1242bp)
protein (414aa)
Serine hydroxymethyltransferase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glyA; serine hydroxymethyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1139_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7243..8439)
-----------------
DNA (1197bp)
protein (399aa)
Probable tRNA sulfurtransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiI; thiamine biosynthesis protein thiI
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1139_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(8447..9256)
-----------------
DNA (810bp)
protein (270aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histone deacetylase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1139_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9253..9840)
-----------------
DNA (588bp)
protein (196aa)
Molybdenum cofactor guanylyltransferase bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mobA; molybdopterin-guanine dinucleotide biosynthesis protein A
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1139_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9837..10445)
-----------------
DNA (609bp)
protein (203aa)
Putative translation factor bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation factor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1139_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10482..11366)
-----------------
DNA (885bp)
protein (295aa)
Tetratricopeptide TPR_2 repeat protein bin=GWC2_Methylomirabilis_70_24 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1139_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11377..12933)
-----------------
DNA (1557bp)
protein (519aa)
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] bin=bin7_NC10_sister species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1139_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12930..13559)
-----------------
DNA (630bp)
protein (210aa)
purN; phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Tribolium castaneum genus=Tribolium taxon_order=Coleoptera taxon_class=Insecta phylum=Arthropoda tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1139_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13562..14974)
-----------------
DNA (1413bp)
protein (471aa)
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1139_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14955..17147)
-----------------
DNA (2193bp)
protein (731aa)
phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
purL; phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1139_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17276..17989)
-----------------
DNA (714bp)
protein (238aa)
Phosphoribosylformylglycinamidine synthase 1 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phosphoribosylformylglycinamidine synthase I
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1139_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17999..18277)
-----------------
DNA (279bp)
protein (93aa)
Phosphoribosylformylglycinamidine synthase protein bin=GWA2_Methylomirabilis_73_35 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yexA; phosphoribosylformylglycinamidine synthase protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1139_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18351..19646)
-----------------
DNA (1296bp)
protein (432aa)
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
adenylosuccinate lyase (EC:4.3.2.2)
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1139_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(19814..20041)
-----------------
DNA (228bp)
protein (76aa)
Peptidase M16 domain protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase M16 domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1139_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20008..21144)
-----------------
DNA (1137bp)
protein (379aa)
Putative enzyme bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium 98 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptidase M16 domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1139_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21137..23275)
-----------------
DNA (2139bp)
protein (713aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pnp; polynucleotide phosphorylase/polyadenylase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1139_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(23406..23675)
-----------------
DNA (270bp)
protein (90aa)
30S ribosomal protein S15 bin=GWA2_Methylomirabilis_73_35 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S15
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1139_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23790..24710)
-----------------
DNA (921bp)
protein (307aa)
Riboflavin biosynthesis protein RibF bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
riboflavin biosynthesis protein RibF
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1139_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24688..25548)
-----------------
DNA (861bp)
protein (287aa)
tRNA pseudouridine synthase B bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA pseudouridine synthase B
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1139_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(25614..26600)
-----------------
DNA (987bp)
protein (329aa)
Exopolyphosphatase-like enzyme bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exopolyphosphatase-related proteins
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1139_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(26597..26950)
-----------------
DNA (354bp)
protein (118aa)
Ribosome-binding factor A bin=GWA2_Methylomirabilis_73_35 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rbfA; putative ribosome-binding factor A
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1139_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26950..27240)
-----------------
DNA (291bp)
protein (97aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
Displaying items 1-30 of 54 in total

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