ggKbase home page

PLM3_127_b2_sep16_scaffold_1369

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1369_1
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(317..2626)
DNA (2310bp) protein (770aa)
Uncharacterized protein Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RPQ7_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV34300.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
PLM3_127_b2_sep16_scaffold_1369_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2748..3554)
DNA (807bp) protein (269aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1369_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3551..5134)
DNA (1584bp) protein (528aa)
Methylmalonyl-CoA mutase, N-terminal domain bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methylmalonyl-CoA mutase N-terminal domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1369_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5131..6681)
DNA (1551bp) protein (517aa)
propionyl-CoA carboxylase beta chain (EC:6.4.1.3)
Putative propionyl-CoA carboxylase beta chain bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1369_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6778..7170
DNA (393bp) protein (131aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1369_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7163..7486
DNA (324bp) protein (108aa)
hypothetical protein bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1369_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7507..8889)
DNA (1383bp) protein (461aa)
lpD; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (EC:1.8.1.4) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lpD; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (EC:1.8.1.4)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1369_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8895..10202)
DNA (1308bp) protein (436aa)
pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) (EC:2.3.1.12) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1369_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10206..11201)
DNA (996bp) protein (332aa)
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component subunit beta bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1369_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11206..12228)
DNA (1023bp) protein (341aa)
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1369_11
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(12252..12554)
DNA (303bp) protein (101aa)
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] bin=bin7_NC10_sister species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
NADH:ubiquinone oxidoreductase subunit K (EC:1.6.99.5)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_1369_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12588..13076)
DNA (489bp) protein (163aa)
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1369_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13076..13615)
DNA (540bp) protein (180aa)
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1369_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13612..14703)
DNA (1092bp) protein (364aa)
nuoH; NADH-quinone oxidoreductase chain H (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
NADH dehydrogenase subunit 1
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1369_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14706..16316)
DNA (1611bp) protein (537aa)
NADH dehydrogenase I, G subunit (75 kDa) bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Molybdopterin oxidoreductase Fe4S4 region
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1369_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16316..17542)
DNA (1227bp) protein (409aa)
nuoF; NADH-quinone oxidoreductase subunit F (NADH dehydrogenase I, chain F) (NDH-1, chain F) (EC:1.6.5.3 1.6.99.5) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
nuoF; NADH-quinone oxidoreductase subunit F (NADH dehydrogenase I, chain F) (NDH-1, chain F) (EC:1.6.5.3 1.6.99.5)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1369_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17539..18039)
DNA (501bp) protein (167aa)
NADH dehydrogenase I subunit E bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
NADH-quinone oxidoreductase subunit E
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1369_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18036..19376)
DNA (1341bp) protein (447aa)
NADH-quinone oxidoreductase subunit D bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADH dehydrogenase I subunit D
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1369_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19378..19875)
DNA (498bp) protein (166aa)
NADH-quinone oxidoreductase subunit C bin=GWF2_Methylomirabilis_70_14 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADH (or F420H2) dehydrogenase subunit C
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1369_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(19996..20454)
DNA (459bp) protein (153aa)
NADH dehydrogenase subunit B (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1369_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20445..20798)
DNA (354bp) protein (118aa)
NADH:ubiquinone oxidoreductase subunit 3 (chain A) (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit A bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1369_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20795..21739)
DNA (945bp) protein (315aa)
lipA; lipoyl synthase (EC:2.8.1.8)
Lipoyl synthase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1369_trna_1
unknown

Not on your lists

comp(21766..21847)
DNA (82bp)
transferRNA Leu
PLM3_127_b2_sep16_scaffold_1369_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21883..22665)
DNA (783bp) protein (261aa)
Peptide ABC transporter, membrane protein bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter membrane protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 24 items

View Taxonomy