ggKbase home page

PLM3_127_b2_sep16_scaffold_1373

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1373_1
unknown

Not on your lists

comp(2..256)
DNA (255bp) protein (85aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1373_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(253..2142)
DNA (1890bp) protein (630aa)
two component system sensor histidine kinase (EC:2.7.13.3)
Two component system sensor histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_1373_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2139..3665)
DNA (1527bp) protein (509aa)
ABC-type dipeptide transport system, periplasmic component bin=GWC2_Methylomirabilis_70_24 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC-type dipeptide transport system, periplasmic component
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1373_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3773..3910)
DNA (138bp) protein (46aa)
id=4571218 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1373_5
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(4185..4379)
DNA (195bp) protein (65aa)
Two component system response regulator, sigma54-specific bin=GWF2_Methylomirabilis_70_14 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family two component sigma-54 specific transcriptional regulator
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_1373_6
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4900..5568
DNA (669bp) protein (223aa)
Similarity with known prokaryotic or eukaryotic proteins Tax=Aeromonas hydrophila RepID=O07049_AERHY
Similarity with known prokaryotic or eukaryotic proteins {ECO:0000313|EMBL:AAC45363.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
PLM3_127_b2_sep16_scaffold_1373_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5614..7164)
DNA (1551bp) protein (517aa)
oligopeptide/dipeptide ABC transporter peptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
oligopeptide/dipeptide ABC transporter peptide-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1373_8
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

7483..9300
DNA (1818bp) protein (606aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_1373_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9397..10893
DNA (1497bp) protein (499aa)
proteasome component bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proteasome component
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1373_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10899..11705
DNA (807bp) protein (269aa)
Putative proteasome A-type and B-type bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
proteasome A-type and B-type
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1373_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11709..12401
DNA (693bp) protein (231aa)
Putative proteasome A-type and B-type bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
proteasome A-type and B-type
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1373_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12528..13883
DNA (1356bp) protein (452aa)
hypothetical protein; K13571 proteasome accessory factor A [EC:6.3.2.-] bin=bin7_NC10_sister species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1373_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14014..15006
DNA (993bp) protein (331aa)
coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
putative luciferase-like monooxygenase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1373_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15262..15789
DNA (528bp) protein (176aa)
3-deoxy-manno-octulosonate cytidylyltransferase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-deoxy-D-manno-octulosonate cytidylyltransferase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1373_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15866..17098
DNA (1233bp) protein (411aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
membrane protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1373_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17236..18177
DNA (942bp) protein (314aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1373_17
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18340..19242
DNA (903bp) protein (301aa)
Putative ABC-type sugar transport systems permease Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HSR9_AZOC5
sugar ABC transporter permease
Putative ABC-type sugar transport systems permease {ECO:0000313|EMBL:BAF90208.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
PLM3_127_b2_sep16_scaffold_1373_18
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19239..20111
DNA (873bp) protein (291aa)
ABC-type sugar transport system, permease component Tax=Bradyrhizobium sp. WSM1253 RepID=I2QAH1_9BRAD
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:EIG56777.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
sugar ABC transporter permease
PLM3_127_b2_sep16_scaffold_1373_19
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(20206..21030)
DNA (825bp) protein (275aa)
Beta-lactamase domain protein Tax=uncultured Acidobacteria bacterium RepID=H5SEN1_9BACT
Beta-lactamase domain protein {ECO:0000313|EMBL:BAL54617.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
beta-lactamase
PLM3_127_b2_sep16_scaffold_1373_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

21296..22630
DNA (1335bp) protein (445aa)
Putative sugar uptake ABC transporter periplasmic solute-binding protein bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1373_21
unknown

Not on your lists

comp(22627..22797)
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1373_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

23025..23531
DNA (507bp) protein (169aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1373_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

23534..24382
DNA (849bp) protein (283aa)
Probable sugar ABC transporter, permease protein bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sugar ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1373_24
R_NC10_66_22, NC10, Bacteria

Not on your lists

24483..25367
DNA (885bp) protein (295aa)
ABC transporter, permease protein Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8P9_9PROT
sugar ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1373_25
R_NC10_66_22, NC10, Bacteria

Not on your lists

25364..26236
DNA (873bp) protein (291aa)
sugar ABC transporter permease Tax=Verminephrobacter aporrectodeae RepID=UPI000237652E
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1373_26
unknown

Not on your lists

comp(26208..27254)
DNA (1047bp) protein (349aa)
Ig family protein Tax=Mucilaginibacter paludis DSM 18603 RepID=H1XZB1_9SPHI
PLM3_127_b2_sep16_scaffold_1373_27
unknown

Not on your lists

27387..27842
DNA (456bp) protein (152aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1373_28
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27904..28761)
DNA (858bp) protein (286aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QP09_NITHX
binding-protein-dependent transport system inner membrane protein
Carbohydrate ABC transporter membrane protein 2, CUT1 family {ECO:0000313|EMBL:ABE62038.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
PLM3_127_b2_sep16_scaffold_1373_29
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28766..29749)
DNA (984bp) protein (328aa)
ABC transport system permease protein y4oQ Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0ETE9_CUPNN
ABC transporter permease
ABC transport system permease protein y4oQ {ECO:0000313|EMBL:AEI75620.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
PLM3_127_b2_sep16_scaffold_1373_30
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(29746..31080)
DNA (1335bp) protein (445aa)
Putative ABC-type sugar transport system,periplasmic-binding component Tax=Nitrolancetus hollandicus Lb RepID=I4EJ66_9CHLR
Putative ABC-type sugar transport system,periplasmic-binding component {ECO:0000313|EMBL:CCF84728.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
extracellular solute-binding protein
Displaying items 1-30 of 41 in total

View Taxonomy