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PLM3_127_b2_sep16_scaffold_1480

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1480_1
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..1493
DNA (1491bp) protein (497aa)
Uncharacterized protein Tax=Frankia sp. EUN1f RepID=D3CRV7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFC86589.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
PLM3_127_b2_sep16_scaffold_1480_2
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

1525..3711
DNA (2187bp) protein (729aa)
Uncharacterized protein Tax=Nitrolancetus hollandicus Lb RepID=I4ELW0_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF85673.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
Protein of unknown function (DUF559)
PLM3_127_b2_sep16_scaffold_1480_3
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3986..4477
DNA (492bp) protein (164aa)
DNA polymerase, beta-like region Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RG02_MOOTA
DNA polymerase subunit beta
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_1480_4
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4515..4889
DNA (375bp) protein (125aa)
hypothetical protein Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI00037EA1BC
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_1480_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4996..5595)
DNA (600bp) protein (200aa)
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
braG; amino acid ABC transporter
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1480_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(5592..6341)
DNA (750bp) protein (250aa)
ABC transporter related protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TBK2_9CHLR
branched-chain amino acid transport ATP-binding protein LivG
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1480_7
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(6302..7252)
DNA (951bp) protein (317aa)
ABC transporter permease protein Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6L8_PELHB
ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1480_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(7249..8127)
DNA (879bp) protein (293aa)
Branched-chain amino acid ABC-type transport system, permease component Tax=Polaromonas sp. CF318 RepID=J2KPZ7_9BURK
branched-chain amino acid ABC transporter permease protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1480_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(8149..9321)
DNA (1173bp) protein (391aa)
Amino acid ABC transporter Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JJ94_AGRRK
braC2; amino acid ABC transporter
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1480_10
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

9781..10056
DNA (276bp) protein (92aa)
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3_127_b2_sep16_scaffold_1480_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10227..11552)
DNA (1326bp) protein (442aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00037A3A85
peptidase M20 family succinyl-diaminopimelate desuccinylase-like protein
Peptidase M20 family succinyl-diaminopimelate desuccinylase-like protein {ECO:0000313|EMBL:AIC29985.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
PLM3_127_b2_sep16_scaffold_1480_12
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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11570..12439
DNA (870bp) protein (290aa)
Polysaccharide deacetylase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CA38_SPHTD
Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:KGM42834.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
polysaccharide deacetylase
PLM3_127_b2_sep16_scaffold_1480_13
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12502..13272
DNA (771bp) protein (257aa)
putative short-chain dehydrogenase/reductase (EC:1.1.1.100)
hypothetical protein Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI0003692646
Uncharacterized protein {ECO:0000313|EMBL:ETW96962.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3_127_b2_sep16_scaffold_1480_14
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13361..14332)
DNA (972bp) protein (324aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035E80A3
peptide ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1480_15
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14323..15312)
DNA (990bp) protein (330aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000365F9E0
Oligopeptide/dipeptide ABC transporter, ATPase subunit
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1480_16
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15438..17069)
DNA (1632bp) protein (544aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035CE991
Uncharacterized protein {ECO:0000313|EMBL:ETX08388.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
extracellular solute-binding protein
PLM3_127_b2_sep16_scaffold_1480_17
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17203..18099)
DNA (897bp) protein (299aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00036B24DF
Peptide ABC transporter permease {ECO:0000313|EMBL:ETX08386.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Oligopeptide transport system permease AppC
PLM3_127_b2_sep16_scaffold_1480_18
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18133..19053)
DNA (921bp) protein (307aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003623DD8
Glutathione ABC transporter permease {ECO:0000313|EMBL:ETX08387.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
appB; ABC-type transporter, permease component: PepT family protein
PLM3_127_b2_sep16_scaffold_1480_19
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19316..19627)
DNA (312bp) protein (104aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX02029.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
putative ferredoxin; K05710 dioxygenase ferredoxin subunit bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Rieske (2Fe-2S) domain-containing protein
PLM3_127_b2_sep16_scaffold_1480_20
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19652..20791)
DNA (1140bp) protein (380aa)
Putative TIM-barrel fold metal-dependent hydrolase Tax=Microcoleus sp. PCC 7113 RepID=K9WEB0_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:ETX02030.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
TIM-barrel fold metal-dependent hydrolase
PLM3_127_b2_sep16_scaffold_1480_21
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(20837..21781)
DNA (945bp) protein (315aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003668E94
nucleoside-diphosphate-sugar epimerase
Tax=RBG_13_Chloroflexi_51_18_curated
PLM3_127_b2_sep16_scaffold_1480_22
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21833..22960)
DNA (1128bp) protein (376aa)
Putative TIM-barrel fold metal-dependent hydrolase Tax=Oscillatoria acuminata PCC 6304 RepID=K9TRS1_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:ETX00088.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
TIM-barrel fold metal-dependent hydrolase
PLM3_127_b2_sep16_scaffold_1480_23
unknown

Not on your lists

22972..23772
DNA (801bp) protein (267aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1480_24
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(23814..24749)
DNA (936bp) protein (312aa)
2-keto-4-pentenoate hydratase Tax=Cupriavidus basilensis OR16 RepID=H1S4T5_9BURK
fumarylacetoacetate (FAA) hydrolase family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3_127_b2_sep16_scaffold_1480_25
unknown

Not on your lists

comp(24746..24841)
DNA (96bp) protein (32aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1480_26
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24841..25758)
DNA (918bp) protein (306aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0003179275
Uncharacterized protein {ECO:0000313|EMBL:ETX00582.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
NHL repeat family protein
PLM3_127_b2_sep16_scaffold_1480_27
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25778..26854)
DNA (1077bp) protein (359aa)
Glycosyl hydrolase, BNR repeat protein Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46P13_CUPPJ
BNR repeat-containing glycosyl hydrolase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_127_b2_sep16_scaffold_1480_28
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27000..28181
DNA (1182bp) protein (394aa)
Putative hydrolase NrgC Tax=Cystobacter fuscus DSM 2262 RepID=S9P7V7_9DELT
Acyl-CoA dehydrogenase type 2 {ECO:0000313|EMBL:CQD07337.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
hydroxylase
PLM3_127_b2_sep16_scaffold_1480_29
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28197..29723
DNA (1527bp) protein (509aa)
Putative uncharacterized protein Tax=uncultured microorganism RepID=E0X6P7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ETX02581.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3_127_b2_sep16_scaffold_1480_30
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29817..30371
DNA (555bp) protein (185aa)
DSBA oxidoreductase bin=GWC2_Methylomirabilis_70_16 species=SAR324 cluster bacterium SCGC AAA001-C10 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DSBA oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
Displaying 30 items

View Taxonomy