ggKbase home page

PLM3_127_b2_sep16_scaffold_1598

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1598_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1..270
DNA (270bp) protein (90aa)
Extracellular solute-binding protein family 5 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_1598_2
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

276..1280
DNA (1005bp) protein (335aa)
Acryloyl-CoA reductase Tax=Ralstonia pickettii DTP0602 RepID=U3QHT2_RALPI
Acryloyl-CoA reductase {ECO:0000313|EMBL:AII07532.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (Nocardia opaca).;"
acryloyl-CoA reductase
PLM3_127_b2_sep16_scaffold_1598_3
Bacillus thermoamyloliquefaciens, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1359..3716
DNA (2358bp) protein (786aa)
alpha-glucosidase (EC:3.2.1.20)
Alpha-glucosidase Tax=Geobacillus sp. (strain WCH70) RepID=C5D738_GEOSW
Alpha-glucosidase III {ECO:0000313|EMBL:BAB32697.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus thermoamyloliquefaciens.;"
PLM3_127_b2_sep16_scaffold_1598_4
unknown

Not on your lists

comp(3738..4052)
DNA (315bp) protein (105aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1598_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4177..6255)
DNA (2079bp) protein (693aa)
Twin-arginine translocation pathway signal Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR4_MESSB
twin-arginine translocation pathway signal
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1598_6
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

6401..7639
DNA (1239bp) protein (413aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
yqjV-like MFS-type transporter
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_127_b2_sep16_scaffold_1598_7
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7759..8922
DNA (1164bp) protein (388aa)
Uncharacterized protein Tax=Frankia alni (strain ACN14a) RepID=Q0RHX3_FRAAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ62900.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM3_127_b2_sep16_scaffold_1598_8
unknown

Not on your lists

comp(8802..9566)
DNA (765bp) protein (255aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1598_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9598..9882
DNA (285bp) protein (95aa)
Uncharacterized protein Tax=Rhizobium sp. CF080 RepID=J3C8I1_9RHIZ
Creatininase {ECO:0000313|EMBL:KKB06962.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
PLM3_127_b2_sep16_scaffold_1598_10
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9994..10509)
DNA (516bp) protein (172aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035CC1F8
Uncharacterized protein {ECO:0000313|EMBL:ETX04626.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
SMP-30/Gluconolaconase/LRE-like region-containing protein
PLM3_127_b2_sep16_scaffold_1598_11
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10735..11595
DNA (861bp) protein (287aa)
Alpha/beta hydrolase fold Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V6J3_SPHWW
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABQ67909.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
PLM3_127_b2_sep16_scaffold_1598_12
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11616..12446
DNA (831bp) protein (277aa)
Metallo-beta-lactamase family protein Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q483Y2_COLP3
metallo-beta-lactamase
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:AAZ27481.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio; psychroerythus).;"
PLM3_127_b2_sep16_scaffold_1598_13
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12528..13277)
DNA (750bp) protein (250aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI000360E0C6
Uncharacterized protein {ECO:0000313|EMBL:ETW97863.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3_127_b2_sep16_scaffold_1598_14
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13301..13519)
DNA (219bp) protein (73aa)
hypothetical protein Tax=Sciscionella marina RepID=UPI000381A7C8
amidohydrolase family protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_127_b2_sep16_scaffold_1598_15
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13516..14283)
DNA (768bp) protein (256aa)
hypothetical protein Tax=Variovorax paradoxus RepID=UPI0003735B58
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3_127_b2_sep16_scaffold_1598_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14545..15864
DNA (1320bp) protein (440aa)
hypothetical protein Tax=Bacillus sp. L1(2012) RepID=UPI000347465A
Uncharacterized protein {ECO:0000313|EMBL:ETX01083.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
cbaA; 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit
PLM3_127_b2_sep16_scaffold_1598_17
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

15878..17020
DNA (1143bp) protein (381aa)
Cysteine desulfurase (EC:2.8.1.7)
cysteine desulfurase Tax=Afipia birgiae RepID=UPI00035CB0F0
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM3_127_b2_sep16_scaffold_1598_18
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17034..17813
DNA (780bp) protein (260aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Putative enoyl-CoA hydratase/isomerase family protein Tax=uncultured marine microorganism HF4000_APKG10K24 RepID=B3TCH0_9ZZZZ
Crotonase {ECO:0000313|EMBL:ETW98063.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3_127_b2_sep16_scaffold_1598_19
RLO_PLX_64_10, Bacteria

Not on your lists

comp(17929..18321)
DNA (393bp) protein (131aa)
DNA polymerase, beta domain protein region Tax=Roseiflexus sp. (strain RS-1) RepID=A5V1K0_ROSS1
DNA polymerase subunit beta
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_127_b2_sep16_scaffold_1598_20
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(18287..18676)
DNA (390bp) protein (130aa)
HEPN domain protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NH80_ROSCS
HEPN domain-containing protein
HEPN domain protein {ECO:0000313|EMBL:ABU56827.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM3_127_b2_sep16_scaffold_1598_21
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18755..19912)
DNA (1158bp) protein (386aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00036E33EE
Uncharacterized protein {ECO:0000313|EMBL:ETX07993.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
luciferase
PLM3_127_b2_sep16_scaffold_1598_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

20065..21189
DNA (1125bp) protein (375aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_1598_23
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21308..22114
DNA (807bp) protein (269aa)
paaG; enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase Tax=Sphingobium japonicum BiD32 RepID=N1MGD2_9SPHN
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_127_b2_sep16_scaffold_1598_24
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

22236..26954
DNA (4719bp) protein (1573aa)
hypothetical protein Tax=Desulfospira joergensenii RepID=UPI0003B32298
hypothetical protein
Tax=RBG_16_Nitrospirae_64_22_curated
PLM3_127_b2_sep16_scaffold_1598_25
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

26951..29692
DNA (2742bp) protein (914aa)
Outer membrane protein, OMP85 family, putative bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
outer membrane protein assembly complex, YaeT protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM3_127_b2_sep16_scaffold_1598_26
unknown

Not on your lists

29692..29883
DNA (192bp) protein (64aa)

This feature has no annotations

Displaying 26 items

View Taxonomy