ggKbase home page

PLM3_127_b2_sep16_scaffold_1735

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1735_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..381
DNA (381bp) protein (127aa)
id=2982089 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1735_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

642..1607
DNA (966bp) protein (322aa)
Lysine/arginine/ornithine transport system kinase (EC:2.7.-.-); K07588 LAO/AO transport system kinase [EC:2.7.-.-] bin=bin7_NC10_sister species=Thermococcus sibiricus genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1735_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1597..3612
DNA (2016bp) protein (672aa)
Iron-sulfur cluster-binding protein Tax=Sutterella sp. CAG:521 RepID=R7KNM3_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1735_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3609..3968
DNA (360bp) protein (120aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1735_5
unknown

Not on your lists

comp(4038..4235)
DNA (198bp) protein (66aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1735_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4483..5223
DNA (741bp) protein (247aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_1735_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5321..6124
DNA (804bp) protein (268aa)
Abortive infection protein bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
abortive infection protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1735_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6250..6645
DNA (396bp) protein (132aa)
id=4117858 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1735_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6788..7420
DNA (633bp) protein (211aa)
2-oxopent-4-enoate hydratase (EC:4.2.1.80)
4-oxalocrotonate decarboxylase bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1735_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7691..7966
DNA (276bp) protein (92aa)
Coenzyme A pyrophosphatase bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA mismatch repair protein MutT
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1735_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7956..9122)
DNA (1167bp) protein (389aa)
putative signal peptide peptidase SppA (EC:3.4.21.-)
Putative Signal peptide peptidase SppA bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1735_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9162..10097)
DNA (936bp) protein (312aa)
putative F420-dependent oxidoreductase bin=bin7_NC10_sister species=Actinomadura madurae genus=Actinomadura taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
putative oxidoreductase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1735_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

10146..11069
DNA (924bp) protein (308aa)
Aldose 1-epimerase Tax=Chthoniobacter flavus Ellin428 RepID=B4DBD6_9BACT
Aldose 1-epimerase {ECO:0000313|EMBL:EDY16226.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
aldose 1-epimerase
PLM3_127_b2_sep16_scaffold_1735_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11122..12105
DNA (984bp) protein (328aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1735_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12037..12630)
DNA (594bp) protein (198aa)
id=14627808 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1735_16
unknown

Not on your lists

12730..13113
DNA (384bp) protein (128aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1735_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13151..13711
DNA (561bp) protein (187aa)
hypothetical protein bin=bin7_NC10_sister species=Kaistia granuli genus=Kaistia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
phosphotransferase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1735_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13817..14431)
DNA (615bp) protein (205aa)
TetR family transcriptional regulator bin=RBG_19FT_COMBO_GAL15_69_19 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
TetR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1735_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14434..15261
DNA (828bp) protein (276aa)
Hypothetical conserved protein bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1735_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15358..16545)
DNA (1188bp) protein (396aa)
cofH1; FO synthase subunit 2 1 (EC:2.5.1.77)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1735_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16548..17630)
DNA (1083bp) protein (361aa)
Putative menaquinone biosynthesis protein, family bin=GWC2_Methylomirabilis_70_24 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
radical SAM domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1735_22
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17853..18077
DNA (225bp) protein (75aa)
Binding-protein-dependent transport systems inner membrane component Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAX2_ANADF
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABS25868.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM3_127_b2_sep16_scaffold_1735_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18126..18575
DNA (450bp) protein (150aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC-related acyl dehydratase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1735_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18572..19000
DNA (429bp) protein (143aa)
id=4620319 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1735_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19037..20710
DNA (1674bp) protein (558aa)
ilvD; dihydroxy-acid dehydratase (DAD) (EC:4.2.1.9)
Dihydroxy-acid dehydratase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1735_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20694..21329
DNA (636bp) protein (212aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1735_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21341..22372
DNA (1032bp) protein (344aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1735_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22426..22974
DNA (549bp) protein (183aa)
def; peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) (EC:3.5.1.88)
Peptide deformylase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1735_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23054..23377
DNA (324bp) protein (108aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1735_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23374..23940
DNA (567bp) protein (189aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying items 1-30 of 33 in total

View Taxonomy